Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosyl-hopene transferase hpnh | AFIC_002150 | Q92CY2 | Positive | 2222187 - 2223377 | 43891.0 |
| class i sam-dependent methyltransferase | AFIC_002151 | Not Available | Negative | 2223467 - 2224285 | 29619.4 |
| phosphorylase | AFIC_002152 | C6DC27 | Negative | 2224404 - 2225123 | 25338.7 |
| squalene--hopene cyclase | AFIC_002153 | P54924 | Negative | 2225129 - 2227090 | 73253.7 |
| hydroxysqualene dehydroxylase hpne | AFIC_002154 | P55349 | Negative | 2227101 - 2228366 | 45439.2 |
| presqualene diphosphate synthase hpnd | AFIC_002155 | Q6N3F2 | Negative | 2228366 - 2229193 | 30602.9 |
| squalene synthase hpnc | AFIC_002156 | Q6N3F1 | Negative | 2229201 - 2230079 | 32190.7 |
| b12-binding domain-containing radical sam protein | AFIC_002157 | B3QHD1 | Negative | 2230268 - 2231857 | 59988.2 |
| formate dehydrogenase accessory sulfurtransferase fdhd | AFIC_002158 | Q8UC79 | Positive | 2232049 - 2232867 | 29018.2 |
| rhodanese-related sulfurtransferase | AFIC_002159 | Q3SN93 | Positive | 2232934 - 2233689 | 28118.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
