Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxydohydrogena |
| Strain | Z-1062 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
614120 bp
Thymine Count
614391 bp
Guanine Count
1021703 bp
Cytosine Count
1021226 bp
Genome Length
3271440 bp
Protein-coding Genes
3090 genes
Non-Coding Genes
71 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | AFIC_001056 | Q2YKQ9 | Positive | 1099784 - 1100965 | 41895.0 |
| sigma-70 family rna polymerase sigma factor | AFIC_001057 | L0TCG5 | Negative | 1100986 - 1101888 | 33562.1 |
| carboxymuconolactone decarboxylase family protein | AFIC_001058 | P96684 | Negative | 1101891 - 1102337 | 16405.8 |
| cupin domain-containing protein | AFIC_001059 | Not Available | Negative | 1102393 - 1102743 | 12451.7 |
| nad(p)h-binding protein | AFIC_001060 | D5L1S4 | Negative | 1102842 - 1103603 | 26816.0 |
| hypothetical protein | AFIC_001061 | Not Available | Positive | 1103886 - 1105229 | 50457.3 |
| methionine adenosyltransferase | AFIC_001062 | Q20YV7 | Positive | 1105284 - 1106474 | 43315.1 |
| adenosylhomocysteinase | AFIC_001063 | A5ENA7 | Positive | 1106602 - 1108014 | 51557.2 |
| cold-shock protein | AFIC_001064 | P55390 | Positive | 1108396 - 1108605 | 7472.85 |
| cupin domain-containing protein | AFIC_001065 | Not Available | Positive | 1108872 - 1109321 | 15943.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
