Frateuria edaphi 5GH9-34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria edaphi 5GH9-34 is characterized by having a single replicon, indicating a streamlined genetic organization typical of certain bacterial species. The strain is cataloged under the accession number CP088251.1, which provides a reference for its genomic sequence in biological databases. The single replicon structure may contribute to its adaptability and survival in various environments, suggesting that Frateuria edaphi 5GH9-34 could exhibit a level of ecological versatility. This trait is often associated with organisms that thrive in specific niches, where efficient replication and resource utilization are advantageous. The ecological insights into Frateuria edaphi 5GH9-34 could include its potential role in soil microbiomes, as members of the Frateuria genus are generally known for their interactions in terrestrial environments. The presence of this strain in soil ecosystems may have implications for nutrient cycling and soil health, although specific interactions and functions remain to be elucidated. Overall, the genomic and structural traits of Frateuria edaphi 5GH9-34 hint at its potential ecological roles, underscoring the importance of further research into its biological functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria edaphi
Strain5GH9-34

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria edaphi 5GH9-34, Complete Genome

Gene Summary

Adenine Count

609952 bp

Thymine Count

602633 bp

Guanine Count

1275409 bp

Cytosine Count

1281409 bp

Genome Length

3769403 bp

Protein-coding Genes

3362 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr substrate-binding domain-containing proteinLQ772_15600P0A9F8Negative3357627 - 335854133805.4
hypothetical proteinLQ772_15605Not AvailablePositive3358678 - 33588516672.3
aldo/keto reductaseLQ772_15610P77735Positive3359003 - 335995334314.9
nadp-dependent isocitrate dehydrogenaseLQ772_15615P16100Negative3360046 - 336228080550.0
duf4156 domain-containing proteinLQ772_15620Not AvailableNegative3362509 - 336291314190.0
insulinase family proteinLQ772_15625P55679Negative3363063 - 3365870102049.0
hypothetical proteinLQ772_15630Not AvailablePositive3366170 - 33663766931.9
trna (cytidine(34)-2'-o)-methyltransferaseLQ772_15635P0AGJ8Positive3366435 - 336689916948.3
scp2 sterol-binding domain-containing proteinLQ772_15640Q9L6M5Positive3367011 - 336766123430.0
ubiquinone biosynthesis regulatory protein kinase ubibLQ772_15645Q3BZ34Positive3367658 - 336930460961.3

Displaying genes 3121 – 3130 of 3469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.