Frateuria edaphi 5GH9-34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria edaphi 5GH9-34 is characterized by having a single replicon, indicating a streamlined genetic organization typical of certain bacterial species. The strain is cataloged under the accession number CP088251.1, which provides a reference for its genomic sequence in biological databases. The single replicon structure may contribute to its adaptability and survival in various environments, suggesting that Frateuria edaphi 5GH9-34 could exhibit a level of ecological versatility. This trait is often associated with organisms that thrive in specific niches, where efficient replication and resource utilization are advantageous. The ecological insights into Frateuria edaphi 5GH9-34 could include its potential role in soil microbiomes, as members of the Frateuria genus are generally known for their interactions in terrestrial environments. The presence of this strain in soil ecosystems may have implications for nutrient cycling and soil health, although specific interactions and functions remain to be elucidated. Overall, the genomic and structural traits of Frateuria edaphi 5GH9-34 hint at its potential ecological roles, underscoring the importance of further research into its biological functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria edaphi
Strain5GH9-34

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria edaphi 5GH9-34, Complete Genome

Gene Summary

Adenine Count

609952 bp

Thymine Count

602633 bp

Guanine Count

1275409 bp

Cytosine Count

1281409 bp

Genome Length

3769403 bp

Protein-coding Genes

3362 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system atpase gspeLQ772_15550P31742Negative3343916 - 334564663454.4
yada-like family proteinLQ772_15555Not AvailableNegative3345855 - 334790065189.5
m4 family metallopeptidaseLQ772_15560Q02RJ6Negative3348390 - 334996755757.1
s8 family serine peptidaseLQ772_15565P23314Negative3350242 - 335219767388.0
tatd family hydrolaseLQ772_15570A8G8C4Positive3352473 - 335325829179.8
class i sam-dependent methyltransferaseLQ772_15575Q55EX9Negative3353296 - 335404227013.6
pseudouridine synthaseLQ772_15580Q8ZFQ3Negative3354112 - 335464519698.8
methyltransferaseLQ772_15585Not AvailableNegative3354649 - 335548530050.2
nyn domain-containing proteinLQ772_15590Not AvailableNegative3355563 - 335622525393.7
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseLQ772_15595P73138Negative3356411 - 335752339137.4

Displaying genes 3111 – 3120 of 3469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.