Frateuria edaphi 5GH9-34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria edaphi 5GH9-34 is characterized by having a single replicon, indicating a streamlined genetic organization typical of certain bacterial species. The strain is cataloged under the accession number CP088251.1, which provides a reference for its genomic sequence in biological databases. The single replicon structure may contribute to its adaptability and survival in various environments, suggesting that Frateuria edaphi 5GH9-34 could exhibit a level of ecological versatility. This trait is often associated with organisms that thrive in specific niches, where efficient replication and resource utilization are advantageous. The ecological insights into Frateuria edaphi 5GH9-34 could include its potential role in soil microbiomes, as members of the Frateuria genus are generally known for their interactions in terrestrial environments. The presence of this strain in soil ecosystems may have implications for nutrient cycling and soil health, although specific interactions and functions remain to be elucidated. Overall, the genomic and structural traits of Frateuria edaphi 5GH9-34 hint at its potential ecological roles, underscoring the importance of further research into its biological functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria edaphi
Strain5GH9-34

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria edaphi 5GH9-34, Complete Genome

Gene Summary

Adenine Count

609952 bp

Thymine Count

602633 bp

Guanine Count

1275409 bp

Cytosine Count

1281409 bp

Genome Length

3769403 bp

Protein-coding Genes

3362 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dioxygenaseLQ772_11050Q70FG7Positive2365437 - 236621928020.6
cupredoxin family copper-binding proteinLQ772_11055P22365Negative2366224 - 236656211745.0
metallophosphoesteraseLQ772_11060C1A2D8Negative2366559 - 236749734323.9
sigma-70 family rna polymerase sigma factorLQ772_11065Q7AKG9Positive2367649 - 236821821011.0
anti-sigma factorLQ772_11070Not AvailablePositive2368205 - 236897527694.9
ykgj family cysteine cluster proteinLQ772_11075P0AAM0Negative2368981 - 236936713952.7
neutral zinc metallopeptidaseLQ772_11080P64431Negative2369607 - 237047330851.0
mapeg family proteinLQ772_11085P73795Positive2370588 - 237098314036.4
cpbp family intramembrane metalloproteaseLQ772_11090Not AvailablePositive2371079 - 237187627776.0
hypothetical proteinLQ772_11095Not AvailablePositive2371985 - 237259022544.0

Displaying genes 2211 – 2220 of 3469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.