Frateuria edaphi 5GH9-34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Frateuria

Description

Frateuria edaphi 5GH9-34 is characterized by having a single replicon, indicating a streamlined genetic organization typical of certain bacterial species. The strain is cataloged under the accession number CP088251.1, which provides a reference for its genomic sequence in biological databases. The single replicon structure may contribute to its adaptability and survival in various environments, suggesting that Frateuria edaphi 5GH9-34 could exhibit a level of ecological versatility. This trait is often associated with organisms that thrive in specific niches, where efficient replication and resource utilization are advantageous. The ecological insights into Frateuria edaphi 5GH9-34 could include its potential role in soil microbiomes, as members of the Frateuria genus are generally known for their interactions in terrestrial environments. The presence of this strain in soil ecosystems may have implications for nutrient cycling and soil health, although specific interactions and functions remain to be elucidated. Overall, the genomic and structural traits of Frateuria edaphi 5GH9-34 hint at its potential ecological roles, underscoring the importance of further research into its biological functions and interactions within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusFrateuria
SpeciesFrateuria edaphi
Strain5GH9-34

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frateuria edaphi 5GH9-34, Complete Genome

Gene Summary

Adenine Count

609952 bp

Thymine Count

602633 bp

Guanine Count

1275409 bp

Cytosine Count

1281409 bp

Genome Length

3769403 bp

Protein-coding Genes

3362 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virb4 family type iv secretion/conjugal transfer atpaseLQ772_07200Q9RPY1Negative1511550 - 151403091838.8
virb3 family type iv secretion system proteinLQ772_07205Q2YIT7Negative1514079 - 151438711943.1
trbc/virb2 family proteinLQ772_07210Q2YIT6Negative1514380 - 151478713974.3
amidohydrolase family proteinLQ772_07215Q2YIT5Negative1515293 - 151569714738.5
p-type dna transfer atpase virb11LQ772_07220Q8FXK7Negative1515735 - 151678438716.0
hypothetical proteinLQ772_07225Q8YDZ0Negative1516793 - 151797741876.9
trbg/virb9 family p-type conjugative transfer proteinLQ772_07230Q7WDT7Negative1517974 - 151870527628.6
type iv secretion system proteinLQ772_07235Q7WDT8Negative1518738 - 151961031696.7
toxin co-regulated pilus biosynthesis q family proteinLQ772_07240Not AvailableNegative1519610 - 152011618140.9
yerc/yecd family trpr-related proteinLQ772_07245Q7BVT7Positive1520695 - 152102712336.8

Displaying genes 1441 – 1450 of 3469 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.