Kingdom
Pseudomonadati
Phylum
Thermodesulfobacteriota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Pseudodesulfovibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Thermodesulfobacteriota |
| Class | Desulfovibrionia |
| Order | Desulfovibrionales |
| Family | Desulfovibrionaceae |
| Genus | Pseudodesulfovibrio |
| Species | Pseudodesulfovibrio sediminis |
| Strain | SF6 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | curved/spiral |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
866846 bp
Thymine Count
863817 bp
Guanine Count
1016377 bp
Cytosine Count
1017110 bp
Genome Length
3764150 bp
Protein-coding Genes
3514 genes
Non-Coding Genes
103 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine phosphorylase | PSDVSF_04710 | Q13126 | Positive | 493383 - 494132 | 27452.6 |
| 5-methylthioadenosine/s-adenosylhomocysteine deaminase | PSDVSF_04720 | A1VD37 | Positive | 494138 - 495487 | 48959.0 |
| hypothetical protein | PSDVSF_04730 | Not Available | Positive | 495611 - 495898 | 10363.6 |
| diaminopimelate aminotransferase | PSDVSF_04740 | Q6LXF3 | Positive | 495999 - 497222 | 45083.6 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme mnmg | PSDVSF_04750 | Q310P0 | Positive | 497238 - 499121 | 69392.8 |
| hypothetical protein | PSDVSF_04760 | Q9CM13 | Positive | 499252 - 500073 | 30615.3 |
| apolipoprotein n-acyltransferase | PSDVSF_04770 | Q39T32 | Positive | 500077 - 501594 | 56058.7 |
| peptide chain release factor 2 | PSDVSF_04780 | Q927Y4 | Positive | 501637 - 502713 | 40334.3 |
| ggdef domain-containing protein | PSDVSF_04790 | Q9A5I5 | Positive | 502691 - 503548 | 32354.5 |
| site-determining protein | PSDVSF_04800 | G3XD64 | Positive | 503548 - 504369 | 30064.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
