Pseudodesulfovibrio sediminis SF6

curved/spiral

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Pseudodesulfovibrio

Description

Pseudodesulfovibrio sediminis SF6 is a Gram-negative bacterium characterized by its curved to spiral shape. This organism possesses a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The complete genome of P. sediminis SF6 is accessible under the accession number AP024485.1. As a member of the Pseudodesulfovibrio genus, P. sediminis SF6 is likely involved in anaerobic processes, particularly in the reduction of sulfate, which is a common metabolic pathway among sulfate-reducing bacteria. This metabolic capability is significant in biogeochemical cycles, notably in sedimentary environments where sulfate is available as a terminal electron acceptor. The ecological role of Pseudodesulfovibrio sediminis SF6 may extend to its contribution in organic matter decomposition and nutrient cycling in its native habitat. By participating in sulfate reduction, this bacterium can influence the dynamics of microbial communities and the overall health of sediment ecosystems. Understanding the traits and functions of P. sediminis SF6 can provide insights into the complexities of microbial interactions and their ecological implications in sedimentary environments.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusPseudodesulfovibrio
SpeciesPseudodesulfovibrio sediminis
StrainSF6

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudodesulfovibrio sediminis SF6, Complete Genome

Gene Summary

Adenine Count

866846 bp

Thymine Count

863817 bp

Guanine Count

1016377 bp

Cytosine Count

1017110 bp

Genome Length

3764150 bp

Protein-coding Genes

3514 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter substrate-binding proteinPSDVSF_01440O34563Negative144251 - 14507530248.6
polar amino acid abc transporter atp-binding proteinPSDVSF_01450P27675Negative145154 - 14588226894.8
l-serine dehydratasePSDVSF_01460P71349Negative146041 - 14740248959.9
glycosyl transferase family 2PSDVSF_01470Not AvailablePositive147697 - 14935860355.5
succinylglutamate desuccinylasePSDVSF_01480E1V7W0Negative149295 - 15032337233.1
putative alpha-l-glutamate ligasePSDVSF_01490C6BYK5Negative150362 - 15126732207.4
ribosomal protein s6 modification proteinPSDVSF_01500A8H4D4Negative151264 - 15175218140.3
hypothetical proteinPSDVSF_01510Not AvailablePositive152028 - 15238712828.5
magnesium and cobalt transport protein coraPSDVSF_01520Q9WZ31Negative152508 - 15356039986.9
mechanosensitive ion channel protein mscsPSDVSF_01530Q58111Positive153662 - 15448930920.7

Displaying genes 211 – 220 of 3617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.