Caldicellulosiruptor diazotrophicus YA01

Gram-positiveRod

Kingdom

Bacillati

Phylum

Bacillota

Class

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor diazotrophicus YA01 is a Gram-positive bacterium notable for its distinctive characteristics and ecological relevance. This organism possesses flagella, which may contribute to its motility and ability to thrive in various environments. C. diazotrophicus YA01 has a unique genomic structure, with three replicons identified, indicating a complex genetic organization that could play a role in its adaptability and metabolic capabilities. The presence of flagella suggests that C. diazotrophicus YA01 may be able to move towards favorable conditions, potentially enhancing its survival in diverse habitats. The ability to perform nitrogen fixation is an important ecological trait, as it allows the bacterium to convert atmospheric nitrogen into a form that can be utilized by plants and other organisms, thereby contributing to nutrient cycling in ecosystems. Caldicellulosiruptor diazotrophicus YA01 is referenced in three sequence accessions: AP024480.1, AP024481.1, and AP024482.1, which provide additional genetic information that can aid in understanding its physiology and ecological role. The combination of its Gram-positive nature, flagellar presence, and multiple replicons highlights the potential versatility of this bacterium in various environments, particularly in relation to its contributions to nitrogen fixation and cellulose degradation. Overall, C. diazotrophicus YA01 exemplifies the complex interactions that microbes have with their environment and their importance in ecological processes.

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring; Nakabusa Hot Spring
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldicellulosiruptor diazotrophicus YA01, Complete Genome

Gene Summary

Adenine Count

836557 bp

Thymine Count

853491 bp

Guanine Count

440563 bp

Cytosine Count

462153 bp

Genome Length

2592764 bp

Protein-coding Genes

2436 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdate-binding proteinCaldiYA01_19320P0A5Y1Negative2008519 - 200930429627.6
hypothetical proteinCaldiYA01_19330P14887Negative2009351 - 200967712395.2
nitrogenase cofactor biosynthesis protein nifbCaldiYA01_19340D5VRM1Negative2009699 - 201049929966.4
nitrogenase iron-molybdenum cofactor biosynthesis protein nifeCaldiYA01_19350O27607Negative2010501 - 201179048358.9
nitrogenase molybdenum-iron protein subunit betaCaldiYA01_19360P0CW53Negative2011816 - 201319550770.4
nitrogenase protein alpha chainCaldiYA01_19370P20620Negative2013168 - 201456252808.6
nitrogen fixation nifhd region glnb 2CaldiYA01_19380P51604Negative2014603 - 201497713659.0
nitrogen fixation protein nifdCaldiYA01_19390Q50786Negative2015001 - 201531811762.5
nitrogenase reductaseCaldiYA01_19400P54799Negative2015342 - 201616329716.3
hypothetical proteinCaldiYA01_19410Not AvailablePositive2016366 - 20165366494.89

Displaying genes 1981 – 1990 of 2500 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.