Caldicellulosiruptor diazotrophicus YA01

Gram-positiveRod

Kingdom

Bacillati

Phylum

Bacillota

Class

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor diazotrophicus YA01 is a Gram-positive bacterium notable for its distinctive characteristics and ecological relevance. This organism possesses flagella, which may contribute to its motility and ability to thrive in various environments. C. diazotrophicus YA01 has a unique genomic structure, with three replicons identified, indicating a complex genetic organization that could play a role in its adaptability and metabolic capabilities. The presence of flagella suggests that C. diazotrophicus YA01 may be able to move towards favorable conditions, potentially enhancing its survival in diverse habitats. The ability to perform nitrogen fixation is an important ecological trait, as it allows the bacterium to convert atmospheric nitrogen into a form that can be utilized by plants and other organisms, thereby contributing to nutrient cycling in ecosystems. Caldicellulosiruptor diazotrophicus YA01 is referenced in three sequence accessions: AP024480.1, AP024481.1, and AP024482.1, which provide additional genetic information that can aid in understanding its physiology and ecological role. The combination of its Gram-positive nature, flagellar presence, and multiple replicons highlights the potential versatility of this bacterium in various environments, particularly in relation to its contributions to nitrogen fixation and cellulose degradation. Overall, C. diazotrophicus YA01 exemplifies the complex interactions that microbes have with their environment and their importance in ecological processes.

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring; Nakabusa Hot Spring
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldicellulosiruptor diazotrophicus YA01, Complete Genome

Gene Summary

Adenine Count

836557 bp

Thymine Count

853491 bp

Guanine Count

440563 bp

Cytosine Count

462153 bp

Genome Length

2592764 bp

Protein-coding Genes

2436 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mbl fold hydrolaseCaldiYA01_18230C0SP91Negative1879397 - 188019429788.9
udp-n-acetylglucosamine 1-carboxyvinyltransferase 2CaldiYA01_18240Q8R6V0Negative1880216 - 188147545075.1
nitrilaseCaldiYA01_18250Q9NQR4Positive1881681 - 188239727324.2
hypothetical proteinCaldiYA01_18260O31725Negative1882401 - 18826318494.39
ribonuclease jCaldiYA01_18270Q45493Negative1882773 - 188444061485.4
protein-export membrane protein secfCaldiYA01_18280P44590Negative1884568 - 188550034972.5
protein translocase subunit secdCaldiYA01_18290D2RLC8Negative1885501 - 188674844996.7
gamma carbonic anhydrase family proteinCaldiYA01_18300Q5KW03Negative1886873 - 188738818558.7
thioether cross-link-forming sciff peptide maturaseCaldiYA01_18310Q58317Negative1887390 - 188875151904.0
six-cysteine peptide sciffCaldiYA01_18320Not AvailableNegative1888856 - 18889994929.1

Displaying genes 1871 – 1880 of 2500 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.