Caldicellulosiruptor diazotrophicus YA01

Gram-positiveRod

Kingdom

Bacillati

Phylum

Bacillota

Class

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor diazotrophicus YA01 is a Gram-positive bacterium notable for its distinctive characteristics and ecological relevance. This organism possesses flagella, which may contribute to its motility and ability to thrive in various environments. C. diazotrophicus YA01 has a unique genomic structure, with three replicons identified, indicating a complex genetic organization that could play a role in its adaptability and metabolic capabilities. The presence of flagella suggests that C. diazotrophicus YA01 may be able to move towards favorable conditions, potentially enhancing its survival in diverse habitats. The ability to perform nitrogen fixation is an important ecological trait, as it allows the bacterium to convert atmospheric nitrogen into a form that can be utilized by plants and other organisms, thereby contributing to nutrient cycling in ecosystems. Caldicellulosiruptor diazotrophicus YA01 is referenced in three sequence accessions: AP024480.1, AP024481.1, and AP024482.1, which provide additional genetic information that can aid in understanding its physiology and ecological role. The combination of its Gram-positive nature, flagellar presence, and multiple replicons highlights the potential versatility of this bacterium in various environments, particularly in relation to its contributions to nitrogen fixation and cellulose degradation. Overall, C. diazotrophicus YA01 exemplifies the complex interactions that microbes have with their environment and their importance in ecological processes.

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring; Nakabusa Hot Spring
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldicellulosiruptor diazotrophicus YA01, Complete Genome

Gene Summary

Adenine Count

836557 bp

Thymine Count

853491 bp

Guanine Count

440563 bp

Cytosine Count

462153 bp

Genome Length

2592764 bp

Protein-coding Genes

2436 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane proteinCaldiYA01_12210O32107Negative1276573 - 127701916223.2
dna helicaseCaldiYA01_12220Q6GFF2Negative1277027 - 127917182385.6
phenylalanine--trna ligase beta subunitCaldiYA01_12230Q97GL0Negative1279178 - 128155389753.5
phenylalanine--trna ligase alpha subunitCaldiYA01_12240B9MRS9Negative1281581 - 128260339227.5
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotran sferase mtabCaldiYA01_12250P54462Negative1282629 - 128393350447.9
hypothetical proteinCaldiYA01_12260Not AvailablePositive1284137 - 12843678618.52
serine-type d-ala-d-ala carboxypeptidaseCaldiYA01_12270P35150Negative1284408 - 128553242400.2
chorismate synthaseCaldiYA01_12280B9MRS5Negative1285592 - 128674342684.6
hypothetical proteinCaldiYA01_12290Not AvailablePositive1286845 - 128736020602.2
mbl fold hydrolaseCaldiYA01_12300Q5SLP1Negative1287370 - 128899261845.2

Displaying genes 1261 – 1270 of 2500 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.