Caldicellulosiruptor diazotrophicus YA01

Gram-positiveRod

Kingdom

Bacillati

Phylum

Bacillota

Class

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor diazotrophicus YA01 is a Gram-positive bacterium notable for its distinctive characteristics and ecological relevance. This organism possesses flagella, which may contribute to its motility and ability to thrive in various environments. C. diazotrophicus YA01 has a unique genomic structure, with three replicons identified, indicating a complex genetic organization that could play a role in its adaptability and metabolic capabilities. The presence of flagella suggests that C. diazotrophicus YA01 may be able to move towards favorable conditions, potentially enhancing its survival in diverse habitats. The ability to perform nitrogen fixation is an important ecological trait, as it allows the bacterium to convert atmospheric nitrogen into a form that can be utilized by plants and other organisms, thereby contributing to nutrient cycling in ecosystems. Caldicellulosiruptor diazotrophicus YA01 is referenced in three sequence accessions: AP024480.1, AP024481.1, and AP024482.1, which provide additional genetic information that can aid in understanding its physiology and ecological role. The combination of its Gram-positive nature, flagellar presence, and multiple replicons highlights the potential versatility of this bacterium in various environments, particularly in relation to its contributions to nitrogen fixation and cellulose degradation. Overall, C. diazotrophicus YA01 exemplifies the complex interactions that microbes have with their environment and their importance in ecological processes.

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathot spring; Nakabusa Hot Spring
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldicellulosiruptor diazotrophicus YA01, Complete Genome

Gene Summary

Adenine Count

836557 bp

Thymine Count

853491 bp

Guanine Count

440563 bp

Cytosine Count

462153 bp

Genome Length

2592764 bp

Protein-coding Genes

2436 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroorotate dehydrogenase b (nad(+)), electron transfer subunitCaldiYA01_11310P58884Negative1193051 - 119381828204.6
carbamoyl-phosphate synthase (glutamine-hydrolyzing)CaldiYA01_11320Q0TM79Negative1193799 - 1197026119730.0
orotidine 5'-phosphate decarboxylaseCaldiYA01_11330A4XKT3Negative1197059 - 119797334710.5
dihydroorotaseCaldiYA01_11340B9MS22Negative1197970 - 119926547759.7
aspartate carbamoyltransferaseCaldiYA01_11350B9MS21Negative1199262 - 120017934379.9
uracil permeaseCaldiYA01_11360A0A2A5K1W4Negative1200231 - 120160449006.8
bifunctional protein pyrrCaldiYA01_11370B9MS19Negative1201633 - 120218120933.7
pseudouridine synthaseCaldiYA01_11380Q45480Negative1202420 - 120322029892.5
lipoprotein signal peptidaseCaldiYA01_11390B9MS17Negative1203319 - 120377116972.5
molecular chaperone dnakCaldiYA01_11400P42408Negative1203867 - 120449624264.6

Displaying genes 1171 – 1180 of 2500 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.