Rhodoferax lithotrophicus MIZ03

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax lithotrophicus MIZ03 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This organism possesses a single replicon, indicating a streamlined genomic architecture. The complete genome sequence of R. lithotrophicus MIZ03 is accessible under the accession number AP024238.1, providing a resource for further genomic studies and analyses. As a member of the genus Rhodoferax, this bacterium is likely involved in various ecological processes, including biogeochemical cycling and potential bioremediation applications. Its lithotrophic capabilities suggest that it may utilize inorganic compounds as electron donors, which can play a significant role in sustaining microbial communities in specific environments. The ability to metabolize inorganic substrates could contribute to nutrient cycling, especially in habitats where organic matter is limited. In summary, Rhodoferax lithotrophicus MIZ03, with its distinguishing Gram-negative properties, rod shape, and motility via flagella, presents unique biological characteristics that may facilitate its ecological roles. Understanding this organism's metabolic pathways and interactions within its environment can provide insights into its function in microbial ecosystems and its potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax lithotrophicus
StrainMIZ03

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax lithotrophicus MIZ03
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax lithotrophicus MIZ03, Complete Genome

Gene Summary

Adenine Count

1079385 bp

Thymine Count

1073030 bp

Guanine Count

1386805 bp

Cytosine Count

1397461 bp

Genome Length

4936681 bp

Protein-coding Genes

4757 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1,2-phenylacetyl-coa epoxidase, subunit cMIZ03_4662P76079Negative4779555 - 478034328982.4
1,2-phenylacetyl-coa epoxidase, subunit bMIZ03_4663P76078Negative4780343 - 478064511348.4
1,2-phenylacetyl-coa epoxidase, subunit aMIZ03_4664P76077Negative4780642 - 478165538191.1
leucine-, isoleucine-, valine-, threonine-, and alanine-binding proteinMIZ03_4665P21175Negative4781714 - 478285940141.8
beta-ketoadipyl-coa thiolaseMIZ03_4666Q51956Negative4782887 - 478409242009.9
phenylacetate-coenzyme a ligaseMIZ03_4667Q9L9C1Negative4784199 - 478552148814.8
acyl-coenzyme a thioesterase paaiMIZ03_4668P76084Negative4785584 - 478604816653.0
3-hydroxyadipyl-coa dehydrogenaseMIZ03_4669P76083Negative4786045 - 478756852964.7
1,2-epoxyphenylacetyl-coa isomeraseMIZ03_4670P77467Negative4787575 - 478836628173.3
n-succinylglutamate 5-semialdehyde dehydrogenaseMIZ03_4671Q1I6Z5Negative4788376 - 479004359413.8

Displaying genes 4661 – 4670 of 4820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.