Rhodoferax lithotrophicus MIZ03

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax lithotrophicus MIZ03 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which facilitate motility. This organism possesses a single replicon, indicating a streamlined genomic architecture. The complete genome sequence of R. lithotrophicus MIZ03 is accessible under the accession number AP024238.1, providing a resource for further genomic studies and analyses. As a member of the genus Rhodoferax, this bacterium is likely involved in various ecological processes, including biogeochemical cycling and potential bioremediation applications. Its lithotrophic capabilities suggest that it may utilize inorganic compounds as electron donors, which can play a significant role in sustaining microbial communities in specific environments. The ability to metabolize inorganic substrates could contribute to nutrient cycling, especially in habitats where organic matter is limited. In summary, Rhodoferax lithotrophicus MIZ03, with its distinguishing Gram-negative properties, rod shape, and motility via flagella, presents unique biological characteristics that may facilitate its ecological roles. Understanding this organism's metabolic pathways and interactions within its environment can provide insights into its function in microbial ecosystems and its potential applications in biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax lithotrophicus
StrainMIZ03

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax lithotrophicus MIZ03
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax lithotrophicus MIZ03, Complete Genome

Gene Summary

Adenine Count

1079385 bp

Thymine Count

1073030 bp

Guanine Count

1386805 bp

Cytosine Count

1397461 bp

Genome Length

4936681 bp

Protein-coding Genes

4757 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i antifreeze proteinMIZ03_3421Not AvailableNegative3505564 - 350589010717.4
protein kinase ubibMIZ03_3422A1W4D7Negative3505973 - 350754159871.7
hypothetical proteinMIZ03_3423Not AvailableNegative3507538 - 350808920345.9
hypothetical proteinMIZ03_3424Not AvailableNegative3508125 - 350910233878.7
ubiquinone/menaquinone biosynthesis c-methyltransferase ubieMIZ03_3425B2JCU8Negative3509153 - 350988426746.5
hypothetical proteinMIZ03_3426Not AvailableNegative3509909 - 351031914677.0
hypothetical proteinMIZ03_3427F1QXM5Negative3510358 - 3514287145122.0
sn-glycerol-3-phosphate-binding periplasmic protein ugpbMIZ03_3428Q6CZ31Positive3514532 - 351583947344.6
sn-glycerol-3-phosphate transport system permease protein ugpaMIZ03_3429Q7CRU3Positive3515906 - 351673930722.8
l-arabinose transport system permease protein araqMIZ03_3430Q8YCB0Positive3516755 - 351760631209.3

Displaying genes 3421 – 3430 of 4820 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.