Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Rhizobiaceae
Genus
Agrobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Rhizobiaceae |
| Genus | Agrobacterium |
| Species | Agrobacterium vaccinii |
| Strain | B7.6 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | anaerobic digester |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
669124 bp
Thymine Count
655679 bp
Guanine Count
899920 bp
Cytosine Count
911901 bp
Genome Length
3136624 bp
Protein-coding Genes
2906 genes
Non-Coding Genes
121 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoadipyl-coa thiolase | HRR99_21690 | Q51956 | Negative | 1452505 - 1453710 | 41899.6 |
| coa transferase subunit b | HRR99_21695 | Q59091 | Negative | 1453721 - 1454422 | 25002.8 |
| 3-oxoacid coa-transferase subunit a | HRR99_21700 | Q01103 | Negative | 1454419 - 1455126 | 24769.7 |
| helix-turn-helix domain-containing protein | HRR99_21705 | Q52154 | Positive | 1455279 - 1456016 | 26363.6 |
| helix-turn-helix domain-containing protein | HRR99_21710 | B7UNM6 | Negative | 1456013 - 1456891 | 32814.3 |
| 4-hydroxybenzoate 3-monooxygenase | HRR99_21715 | P00438 | Positive | 1457009 - 1458181 | 43210.3 |
| pca operon transcription factor pcaq | HRR99_21720 | P0A4T6 | Negative | 1458196 - 1459125 | 33305.6 |
| 3-oxoadipate enol-lactonase | HRR99_21725 | P00632 | Positive | 1459220 - 1460017 | 28608.1 |
| 4-carboxymuconolactone decarboxylase | HRR99_21730 | P20370 | Positive | 1460020 - 1460436 | 15089.7 |
| protocatechuate 3,4-dioxygenase subunit beta | HRR99_21735 | P00437 | Positive | 1460433 - 1461173 | 27619.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

