Agrobacterium vaccinii B7.6

Gram-negativeRodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium vaccinii B7.6 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, which facilitate motility. Notably, A. vaccinii B7.6 has a unique genomic structure consisting of three replicons. This feature may contribute to its adaptability and versatility in various environments. The organism is identified by specific accessions in genomic databases, which include CP054150.1, CP054151.1, and CP054152.1. These accessions provide valuable resources for researchers interested in the genetic and functional characteristics of A. vaccinii B7.6. The presence of flagella suggests that A. vaccinii B7.6 can actively move towards favorable conditions, which may enhance its survival and colonization in diverse ecological niches. Given its classification within the Agrobacterium genus, this bacterium may also play a role in plant interactions, potentially influencing agricultural practices or plant health. In sum, the characteristics of Agrobacterium vaccinii B7.6, including its Gram-negative status, rod shape, flagella, and unique genomic structure, highlight its potential ecological significance and adaptability. Understanding these traits may provide insights into its role in environmental microbiology and its interactions within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium vaccinii
StrainB7.6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium vaccinii B7.6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatanaerobic digester
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium vaccinii B7.6, Complete Genome

Gene Summary

Adenine Count

669124 bp

Thymine Count

655679 bp

Guanine Count

899920 bp

Cytosine Count

911901 bp

Genome Length

3136624 bp

Protein-coding Genes

2906 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter atp-binding proteinHRR99_01255Q8UA86Negative249145 - 25064154036.6
rhamnose abc transporter substrate-binding proteinHRR99_01260Q57HE0Negative250905 - 25191534943.0
deor/glpr transcriptional regulatorHRR99_01265Q328K6Negative251962 - 25278929993.2
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenaseHRR99_01270P40747Positive252991 - 25508476091.6
yqae/pmp3 family membrane proteinHRR99_01275Q9I5W9Negative255103 - 2552615880.75
l-rhamnose catabolism isomeraseHRR99_01280Q92S14Positive255353 - 25664547160.1
hypothetical proteinHRR99_01285Not AvailablePositive256789 - 2569535839.3
type ii toxin-antitoxin system higa family antitoxinHRR99_01290Not AvailableNegative256969 - 25735814672.4
type ii toxin-antitoxin system higb family toxinHRR99_01295Q8FEM8Negative257358 - 25765411226.4
Trna-thrNot AvailableNot AvailablePositive257802 - 257877Not Available

Displaying genes 361 – 370 of 4620 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.