Agrobacterium vaccinii B7.6

Gram-negativeRodfacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium vaccinii B7.6 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species possesses flagella, which facilitate motility. Notably, A. vaccinii B7.6 has a unique genomic structure consisting of three replicons. This feature may contribute to its adaptability and versatility in various environments. The organism is identified by specific accessions in genomic databases, which include CP054150.1, CP054151.1, and CP054152.1. These accessions provide valuable resources for researchers interested in the genetic and functional characteristics of A. vaccinii B7.6. The presence of flagella suggests that A. vaccinii B7.6 can actively move towards favorable conditions, which may enhance its survival and colonization in diverse ecological niches. Given its classification within the Agrobacterium genus, this bacterium may also play a role in plant interactions, potentially influencing agricultural practices or plant health. In sum, the characteristics of Agrobacterium vaccinii B7.6, including its Gram-negative status, rod shape, flagella, and unique genomic structure, highlight its potential ecological significance and adaptability. Understanding these traits may provide insights into its role in environmental microbiology and its interactions within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium vaccinii
StrainB7.6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Agrobacterium vaccinii B7.6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatanaerobic digester
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium vaccinii B7.6, Complete Genome

Gene Summary

Adenine Count

669124 bp

Thymine Count

655679 bp

Guanine Count

899920 bp

Cytosine Count

911901 bp

Genome Length

3136624 bp

Protein-coding Genes

2906 genes

Non-Coding Genes

121 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xanthine dehydrogenase small subunitHRR99_10990P10351Positive2218952 - 222042153564.4
xanthine dehydrogenase molybdopterin binding subunitHRR99_10995P47990Positive2220425 - 222276485611.6
xanthine dehydrogenase accessory protein xdhcHRR99_11000Q46808Positive2222977 - 222383430558.2
lysr family transcriptional regulatorHRR99_11005P0A9F8Positive2224060 - 222495333202.9
urate hydroxylase puudHRR99_11010Not AvailablePositive2225054 - 222630146792.2
guanine deaminaseHRR99_11015P76641Positive2226298 - 222760548338.1
hamp domain-containing proteinHRR99_11020P55652Positive2227845 - 222980369209.8
sulfite exporter taue/safe family proteinHRR99_11025Not AvailableNegative2229864 - 223060726084.2
alpha-hydroxy-acid oxidizing proteinHRR99_11030A4XYG7Positive2230828 - 223196441679.6
d-alanyl-d-alanine carboxypeptidaseHRR99_11035P0AEB4Positive2232363 - 223361044555.4

Displaying genes 2201 – 2210 of 4620 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.