Chitinophaga oryzae 1303

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga oryzae 1303 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a streamlined genomic structure. The genetic information for Chitinophaga oryzae is cataloged under the accession number CP051204.2, which provides a reference for researchers studying its genomic traits and potential applications. As a member of the Chitinophagaceae family, Chitinophaga oryzae is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This characteristic suggests a potential ecological role in nutrient cycling, particularly in environments where chitinous materials are prevalent. The ability to break down chitin can contribute to soil health and fertility by recycling organic matter. Overall, the traits of Chitinophaga oryzae 1303 highlight its significance in microbial ecology, especially regarding its potential to facilitate the decomposition of chitin-rich substrates.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga oryzae
Strain1303

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga oryzae 1303, Complete Genome

Gene Summary

Adenine Count

2030387 bp

Thymine Count

2061454 bp

Guanine Count

2131913 bp

Cytosine Count

2140131 bp

Genome Length

8363885 bp

Protein-coding Genes

6559 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseHF324_24595P53259Positive24586 - 2541031791.9
rhomboid family intramembrane serine proteaseHF324_24600Q9FZ81Positive25459 - 2639434545.6
endonuclease/exonuclease/phosphatase family proteinHF324_24605Not AvailablePositive26534 - 2760740422.0
endonuclease/exonuclease/phosphatase family proteinHF324_24610Not AvailablePositive27638 - 2878043625.6
cysteine--trna ligaseHF324_24615Q5LIT7Positive28935 - 3043157008.0
m28 family peptidaseHF324_24620Q86PD7Positive30470 - 3144435981.4
dna-3-methyladenine glycosylase 2 family proteinHF324_24625Q92383Positive31497 - 3212323810.2
alpha-ketoglutarate-dependent dioxygenase alkbHF324_24630Q96Q83Positive32165 - 3278523745.1
hypothetical proteinHF324_24635Not AvailablePositive32803 - 3368434283.4
duf4377 domain-containing proteinHF324_24640Not AvailablePositive33790 - 3449726810.6

Displaying genes 31 – 40 of 2598 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.