Chitinophaga oryzae 1303

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga oryzae 1303 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, indicating a streamlined genomic structure. The genetic information for Chitinophaga oryzae is cataloged under the accession number CP051204.2, which provides a reference for researchers studying its genomic traits and potential applications. As a member of the Chitinophagaceae family, Chitinophaga oryzae is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This characteristic suggests a potential ecological role in nutrient cycling, particularly in environments where chitinous materials are prevalent. The ability to break down chitin can contribute to soil health and fertility by recycling organic matter. Overall, the traits of Chitinophaga oryzae 1303 highlight its significance in microbial ecology, especially regarding its potential to facilitate the decomposition of chitin-rich substrates.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga oryzae
Strain1303

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga oryzae 1303, Complete Genome

Gene Summary

Adenine Count

2030387 bp

Thymine Count

2061454 bp

Guanine Count

2131913 bp

Cytosine Count

2140131 bp

Genome Length

8363885 bp

Protein-coding Genes

6559 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-n-acetylmuramoyl-pentapeptide- transferaseHF324_29900A6H198Negative1277710 - 127896946933.0
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseHF324_29905Q11RG9Negative1279061 - 128052753228.0
transpeptidase family proteinHF324_29910G3XD46Negative1280528 - 128263377954.6
hypothetical proteinHF324_29915Not AvailableNegative1282845 - 128313511202.0
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhHF324_29920Q8A251Negative1283331 - 128424234177.1
division/cell wall cluster transcriptional repressor mrazHF324_29925A0M535Negative1284254 - 128472117491.9
outer membrane protein assembly factor bamdHF324_29930Q9A6U9Positive1285233 - 128606632792.8
dna-directed rna polymerase subunit omegaHF324_29935Not AvailablePositive1286035 - 128637613202.4
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcHF324_29940A0A2I9Positive1286487 - 128769543326.6
duf4835 family proteinHF324_29945Not AvailablePositive1287688 - 128861435381.3

Displaying genes 1091 – 1100 of 2598 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.