Paenibacillus lycopersici 12200R-189

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus lycopersici 12200R-189 is a bacterial strain characterized by its single replicon structure, which is significant for its genomic stability and replication efficiency. This strain is cataloged under the accession number CP048209.1, indicating its presence in genomic databases for further research and analysis. As a member of the genus Paenibacillus, this strain is likely associated with plant interactions, particularly in relation to its name, which suggests a connection to tomatoes (lycopersici referring to the tomato plant, Solanum lycopersicum). Members of the Paenibacillus genus are known for various beneficial traits, including plant growth promotion and biocontrol properties. Although specific functions of strain 12200R-189 are not detailed, its classification implies potential applications in agriculture, particularly in enhancing crop resilience or productivity. Moreover, the presence of a single replicon may suggest a streamlined genetic organization, which can facilitate adaptability to environmental changes. This trait is often associated with the ability of bacteria to thrive in specific ecological niches, further indicating the potential ecological role of Paenibacillus lycopersici 12200R-189 in its native habitat. Overall, the genomic characteristics of this strain provide a foundation for understanding its potential applications in sustainable agriculture and its interactions within plant ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus lycopersici
Strain12200R-189

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus lycopersici 12200R-189, Complete Genome

Gene Summary

Adenine Count

1418512 bp

Thymine Count

1407017 bp

Guanine Count

1964759 bp

Cytosine Count

1953022 bp

Genome Length

6743310 bp

Protein-coding Genes

5723 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dead/deah box helicaseGXP70_29150Q814I2Negative6673513 - 667497654051.4
alpha-mannosidaseGXP70_29155Q91W89Negative6675746 - 6678760111733.0
substrate-binding domain-containing proteinGXP70_29160Q9S470Negative6678887 - 668007743619.5
transcription elongation factor greaGXP70_29165A3DJG6Negative6680792 - 668125917289.8
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnGXP70_29170Q5WKB6Negative6681600 - 668266139518.6
copg family transcriptional regulatorGXP70_29175Not AvailablePositive6682854 - 66831119101.99
dna polymerase iii subunit betaGXP70_29180Q9RCA1Positive6683115 - 668425139308.4
duf11 domain-containing proteinGXP70_29185Not AvailablePositive6684363 - 6688709153803.0
fad-dependent oxidoreductaseGXP70_29190L7WC64Positive6689052 - 669037446752.2
rna polymerase sigma-70 factorGXP70_29195L0TCG5Positive6690427 - 669132332483.0

Displaying genes 5831 – 5840 of 5886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.