Paenibacillus lycopersici 12200R-189

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus lycopersici 12200R-189 is a bacterial strain characterized by its single replicon structure, which is significant for its genomic stability and replication efficiency. This strain is cataloged under the accession number CP048209.1, indicating its presence in genomic databases for further research and analysis. As a member of the genus Paenibacillus, this strain is likely associated with plant interactions, particularly in relation to its name, which suggests a connection to tomatoes (lycopersici referring to the tomato plant, Solanum lycopersicum). Members of the Paenibacillus genus are known for various beneficial traits, including plant growth promotion and biocontrol properties. Although specific functions of strain 12200R-189 are not detailed, its classification implies potential applications in agriculture, particularly in enhancing crop resilience or productivity. Moreover, the presence of a single replicon may suggest a streamlined genetic organization, which can facilitate adaptability to environmental changes. This trait is often associated with the ability of bacteria to thrive in specific ecological niches, further indicating the potential ecological role of Paenibacillus lycopersici 12200R-189 in its native habitat. Overall, the genomic characteristics of this strain provide a foundation for understanding its potential applications in sustainable agriculture and its interactions within plant ecosystems.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus lycopersici
Strain12200R-189

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus lycopersici 12200R-189, Complete Genome

Gene Summary

Adenine Count

1418512 bp

Thymine Count

1407017 bp

Guanine Count

1964759 bp

Cytosine Count

1953022 bp

Genome Length

6743310 bp

Protein-coding Genes

5723 genes

Non-Coding Genes

163 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminoglycoside phosphotransferase family proteinGXP70_25750Not AvailablePositive5867700 - 586866235734.3
abc transporter substrate-binding proteinGXP70_25755A0A0H2UMY0Positive5868752 - 587026354290.1
aldo/keto reductaseGXP70_25760O23016Negative5870497 - 587143534533.2
helix-turn-helix transcriptional regulatorGXP70_25765P96673Positive5871606 - 587193812618.4
hd-gyp domain-containing proteinGXP70_25770Q9HWS0Negative5871989 - 587300537821.6
rna polymerase sigma factorGXP70_25775P9WGG4Negative5873282 - 587386922796.4
copper amine oxidase n-terminal domain-containing proteinGXP70_25780P9WM00Negative5874574 - 587580644527.5
phosphatase pap2 family proteinGXP70_25785O34349Negative5875895 - 587652423387.2
protein phosphatase 2c domain-containing proteinGXP70_25790Not AvailableNegative5877165 - 587801330232.8
hypothetical proteinGXP70_25795Not AvailableNegative5878227 - 58785059884.79

Displaying genes 5151 – 5160 of 5886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.