Sodalis ligni dw23

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Bruguierivoracaceae

Genus

Sodalis

Description

Sodalis ligni dw23 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which suggests motility. The organism has a single replicon, indicating a streamlined genomic structure. The complete genomic data for this strain can be referenced through the accession number CP075169.1. This bacterium's Gram-negative classification indicates that it possesses an outer membrane, which can contribute to its resilience in various environments and influence its interactions with other microorganisms. The presence of flagella may enhance its ability to move toward nutrient sources or away from harmful conditions, potentially playing a role in its ecological niche. Understanding the traits of Sodalis ligni dw23 can provide insights into its ecological role. As a motile, Gram-negative bacterium, it may participate in complex microbial communities, possibly influencing nutrient cycling and organic matter decomposition in its habitat. The ability to navigate its environment effectively could allow this bacterium to exploit a range of ecological niches, which is vital for sustaining its population and contributing to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyBruguierivoracaceae
GenusSodalis
SpeciesSodalis ligni
Straindw23

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sodalis ligni dw23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sodalis ligni dw23, Complete Genome

Gene Summary

Adenine Count

1451300 bp

Thymine Count

1450926 bp

Guanine Count

1770436 bp

Cytosine Count

1771029 bp

Genome Length

6443694 bp

Protein-coding Genes

5726 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiamine abc transporter substrate binding subunitGTU79_23265P31550Positive4981071 - 498205136300.4
thiamine/thiamine pyrophosphate abc transporter permease thipGTU79_23270Q8ZRV1Positive4982027 - 498363458862.0
thiamine abc transporter atp-binding protein thiqGTU79_23275Q2NVW9Positive4983621 - 498433425807.3
s8 family serine peptidaseGTU79_23280P23314Positive4984811 - 498622951514.4
deda family proteinGTU79_23285P30149Negative4986316 - 498708328115.8
dna polymerase iiGTU79_23290P21189Positive4987313 - 498968890395.2
rna polymerase-associated protein rapaGTU79_23295A1JJG0Positive4990026 - 4992932110041.0
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaGTU79_23300P0AA37Positive4992979 - 499363224554.8
co-chaperone djlaGTU79_23305Q74Q30Negative4994465 - 499528930793.3
lps assembly protein lptdGTU79_23310Q2NVX3Positive4995472 - 499781487909.4

Displaying genes 4661 – 4670 of 6003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.