Sodalis ligni dw23

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Bruguierivoracaceae

Genus

Sodalis

Description

Sodalis ligni dw23 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which suggests motility. The organism has a single replicon, indicating a streamlined genomic structure. The complete genomic data for this strain can be referenced through the accession number CP075169.1. This bacterium's Gram-negative classification indicates that it possesses an outer membrane, which can contribute to its resilience in various environments and influence its interactions with other microorganisms. The presence of flagella may enhance its ability to move toward nutrient sources or away from harmful conditions, potentially playing a role in its ecological niche. Understanding the traits of Sodalis ligni dw23 can provide insights into its ecological role. As a motile, Gram-negative bacterium, it may participate in complex microbial communities, possibly influencing nutrient cycling and organic matter decomposition in its habitat. The ability to navigate its environment effectively could allow this bacterium to exploit a range of ecological niches, which is vital for sustaining its population and contributing to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyBruguierivoracaceae
GenusSodalis
SpeciesSodalis ligni
Straindw23

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sodalis ligni dw23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sodalis ligni dw23, Complete Genome

Gene Summary

Adenine Count

1451300 bp

Thymine Count

1450926 bp

Guanine Count

1770436 bp

Cytosine Count

1771029 bp

Genome Length

6443694 bp

Protein-coding Genes

5726 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase large subunitGTU79_10020B4RCC2Positive2127244 - 212865650590.0
3-isopropylmalate dehydratase small subunitGTU79_10025Q5FUG4Positive2128653 - 212925822743.0
lysr family transcriptional regulatorGTU79_10030P37641Negative2130005 - 213093734882.2
sdr family oxidoreductaseGTU79_10035Q5BH34Positive2131067 - 213184027085.3
lipid a hydroxylase lpxoGTU79_10040Q12797Positive2131996 - 213289835141.7
plp-dependent aminotransferase family proteinGTU79_10045Q01856Negative2133049 - 213444651544.4
msmeg_0572 family nitrogen starvation response proteinGTU79_10050Not AvailablePositive2134828 - 213531017690.4
nit6803 family nitriliaseGTU79_10055Q6RWG0Positive2135323 - 213640839743.4
msmeg_0568 family radical sam proteinGTU79_10060N0DKX5Positive2136383 - 213747738749.6
gnat family n-acetyltransferaseGTU79_10065Not AvailablePositive2137491 - 213805421624.1

Displaying genes 2171 – 2180 of 6003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.