Sodalis ligni dw23

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Bruguierivoracaceae

Genus

Sodalis

Description

Sodalis ligni dw23 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which suggests motility. The organism has a single replicon, indicating a streamlined genomic structure. The complete genomic data for this strain can be referenced through the accession number CP075169.1. This bacterium's Gram-negative classification indicates that it possesses an outer membrane, which can contribute to its resilience in various environments and influence its interactions with other microorganisms. The presence of flagella may enhance its ability to move toward nutrient sources or away from harmful conditions, potentially playing a role in its ecological niche. Understanding the traits of Sodalis ligni dw23 can provide insights into its ecological role. As a motile, Gram-negative bacterium, it may participate in complex microbial communities, possibly influencing nutrient cycling and organic matter decomposition in its habitat. The ability to navigate its environment effectively could allow this bacterium to exploit a range of ecological niches, which is vital for sustaining its population and contributing to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyBruguierivoracaceae
GenusSodalis
SpeciesSodalis ligni
Straindw23

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sodalis ligni dw23
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sodalis ligni dw23, Complete Genome

Gene Summary

Adenine Count

1451300 bp

Thymine Count

1450926 bp

Guanine Count

1770436 bp

Cytosine Count

1771029 bp

Genome Length

6443694 bp

Protein-coding Genes

5726 genes

Non-Coding Genes

277 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine n1-acetyltransferaseGTU79_05505P0A952Negative1181710 - 118226421910.3
multidrug efflux smr transporterGTU79_05510Q9X2N9Negative1182322 - 118265111630.8
mcp four helix bundle domain-containing proteinGTU79_05515P21823Positive1183083 - 118463955826.5
c39 family peptidaseGTU79_05520Not AvailablePositive1184682 - 118534124057.4
mfs transporterGTU79_05525P31474Negative1185438 - 118694653510.0
drug/metabolite exporter yedaGTU79_05530P0AA72Negative1187154 - 118810433185.0
lrp/asnc family transcriptional regulatorGTU79_05535P96582Positive1188256 - 118869316252.0
excinuclease choGTU79_05540Q8XDZ7Negative1188925 - 118978832727.6
nickel-responsive transcriptional regulator nikrGTU79_05545B9JL06Negative1189977 - 119045017685.9
urea abc transporter atp-binding subunit urteGTU79_05550P21630Negative1190521 - 119121925396.4

Displaying genes 1311 – 1320 of 6003 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.