Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Pseudooceanicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Pseudooceanicola |
| Species | Pseudooceanicola spongiae |
| Strain | HQ09 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
799114 bp
Thymine Count
802892 bp
Guanine Count
1386602 bp
Cytosine Count
1377173 bp
Genome Length
4365781 bp
Protein-coding Genes
4001 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | F3W81_09145 | P0ACT4 | Positive | 1941286 - 1941927 | 24562.2 |
| 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase | F3W81_09150 | Q6GLT8 | Negative | 1941976 - 1942827 | 30258.9 |
| zinc-binding dehydrogenase | F3W81_09155 | Q53FA7 | Negative | 1942926 - 1943930 | 34225.0 |
| biphenyl 2,3-dioxygenase | F3W81_09160 | P08695 | Negative | 1944000 - 1944977 | 36020.4 |
| helix-turn-helix domain-containing protein | F3W81_09165 | P77569 | Positive | 1945217 - 1945945 | 27196.7 |
| c4-dicarboxylate abc transporter substrate-binding protein | F3W81_09170 | Q315G1 | Negative | 1945995 - 1947005 | 34911.5 |
| trap transporter large permease subunit | F3W81_09175 | Q9HU16 | Negative | 1947107 - 1948408 | 45163.4 |
| trap transporter small permease subunit | F3W81_09180 | Not Available | Negative | 1948436 - 1948993 | 20095.2 |
| bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | F3W81_09185 | A0R1T4 | Negative | 1949037 - 1950635 | 58168.0 |
| sulfatase-like hydrolase/transferase | F3W81_09190 | Q1M964 | Negative | 1950755 - 1952416 | 61675.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
