Paraburkholderia dioscoreae Msb3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia dioscoreae Msb3 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This species is notable for having five replicons, indicating a complex genome organization that may contribute to its adaptability in various environments. The presence of multiple replicons can provide advantages in terms of genetic diversity and regulation, potentially allowing Paraburkholderia dioscoreae Msb3 to thrive in different ecological niches. This trait may facilitate the bacterium's ability to respond to environmental stresses or to utilize varied substrates, which is often observed in members of the Burkholderia genus. The genetic information for Paraburkholderia dioscoreae Msb3 is cataloged under several accession numbers: LR699553.1, LR699554.1, LR699555.1, LR699556.1, and LR699557.1. These accessions reflect its genomic data, supporting further research into its properties and applications. In terms of ecological insight, the motility conferred by flagella may enhance the bacterium's ability to colonize specific environments, interact with plant root systems, or engage in biogeochemical cycles. Such characteristics could be integral to its role in soil ecosystems or its interactions with host organisms, suggesting potential applications in agriculture or bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia dioscoreae
StrainMsb3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia dioscoreae Msb3, Complete Genome

Gene Summary

Adenine Count

834166 bp

Thymine Count

836680 bp

Guanine Count

1404984 bp

Cytosine Count

1404167 bp

Genome Length

4479997 bp

Protein-coding Genes

4317 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic-ring-hydroxylating dioxygenase subunit betaPDMSB3_2373Q53123Negative2461972 - 246253821320.4
ring hydroxylating enzyme alpha subunitPDMSB3_2374Q53122Negative2462579 - 246397052062.4
3-sulfolactaldehyde reductasePDMSB3_2375P0A9V8Negative2464146 - 246506032038.8
alpha-ketoglutaric semialdehyde dehydrogenasePDMSB3_2376P42236Negative2465109 - 246653950806.3
transcriptional regulator, lysr familyPDMSB3_2377P27111Positive2466728 - 246767533659.6
regulator of rnase e activity rraaPDMSB3_2378Q9KBI9Positive2467810 - 246846023519.3
faa hydrolase family proteinPDMSB3_2379I6Y276Positive2468481 - 246925427266.7
(z)-2-((n-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenasePDMSB3_2380Q6F9F7Positive2469295 - 247077353451.5
sulfopyruvate decarboxylase, alpha subunitPDMSB3_2381Q6M060Positive2470894 - 247143019446.4
thiamine pyrophosphate enzyme, c-terminal tpp binding domainPDMSB3_2382O86938Positive2471427 - 247203221109.2

Displaying genes 6811 – 6820 of 8285 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.