Paraburkholderia dioscoreae Msb3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia dioscoreae Msb3 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This species is notable for having five replicons, indicating a complex genome organization that may contribute to its adaptability in various environments. The presence of multiple replicons can provide advantages in terms of genetic diversity and regulation, potentially allowing Paraburkholderia dioscoreae Msb3 to thrive in different ecological niches. This trait may facilitate the bacterium's ability to respond to environmental stresses or to utilize varied substrates, which is often observed in members of the Burkholderia genus. The genetic information for Paraburkholderia dioscoreae Msb3 is cataloged under several accession numbers: LR699553.1, LR699554.1, LR699555.1, LR699556.1, and LR699557.1. These accessions reflect its genomic data, supporting further research into its properties and applications. In terms of ecological insight, the motility conferred by flagella may enhance the bacterium's ability to colonize specific environments, interact with plant root systems, or engage in biogeochemical cycles. Such characteristics could be integral to its role in soil ecosystems or its interactions with host organisms, suggesting potential applications in agriculture or bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia dioscoreae
StrainMsb3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia dioscoreae Msb3, Complete Genome

Gene Summary

Adenine Count

834166 bp

Thymine Count

836680 bp

Guanine Count

1404984 bp

Cytosine Count

1404167 bp

Genome Length

4479997 bp

Protein-coding Genes

4317 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylcrotonyl-coa carboxylase carboxyl transferase subunitPDMSB3_2193I6YDK7Negative2278237 - 227984457513.0
acyl-coa dehydrogenase, short-chain specificPDMSB3_2194Q9FS87Negative2279859 - 228104042833.6
predicted transcriptional regulator liuq of leucine degradation pathway, tetr familyPDMSB3_2195P94548Positive2281338 - 228208427801.4
conserved protein of unknown functionPDMSB3_2196O32135Positive2282183 - 228301330624.4
3-deoxy-d-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressiblePDMSB3_2197P44303Positive2283142 - 228426040536.5
hu, dna-binding transcriptional regulator, beta subunitPDMSB3_2198I1WEI8Negative2284465 - 22847439167.86
conserved exported protein of unknown functionPDMSB3_2199Not AvailablePositive2285094 - 228547713308.9
diguanylate cyclase (ggdef) domain-containing proteinPDMSB3_2200Q9ABX9Positive2285659 - 228763272793.2
conserved protein of unknown functionPDMSB3_2201Not AvailableNegative2287753 - 228848126716.5
transcriptional regulatorPDMSB3_2202P0A9F8Positive2288718 - 228965633809.1

Displaying genes 6631 – 6640 of 8285 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.