Paraburkholderia dioscoreae Msb3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia dioscoreae Msb3 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This species is notable for having five replicons, indicating a complex genome organization that may contribute to its adaptability in various environments. The presence of multiple replicons can provide advantages in terms of genetic diversity and regulation, potentially allowing Paraburkholderia dioscoreae Msb3 to thrive in different ecological niches. This trait may facilitate the bacterium's ability to respond to environmental stresses or to utilize varied substrates, which is often observed in members of the Burkholderia genus. The genetic information for Paraburkholderia dioscoreae Msb3 is cataloged under several accession numbers: LR699553.1, LR699554.1, LR699555.1, LR699556.1, and LR699557.1. These accessions reflect its genomic data, supporting further research into its properties and applications. In terms of ecological insight, the motility conferred by flagella may enhance the bacterium's ability to colonize specific environments, interact with plant root systems, or engage in biogeochemical cycles. Such characteristics could be integral to its role in soil ecosystems or its interactions with host organisms, suggesting potential applications in agriculture or bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia dioscoreae
StrainMsb3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia dioscoreae Msb3, Complete Genome

Gene Summary

Adenine Count

834166 bp

Thymine Count

836680 bp

Guanine Count

1404984 bp

Cytosine Count

1404167 bp

Genome Length

4479997 bp

Protein-coding Genes

4317 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulator containing a chey-like receiver domain and an hth dna-binding domainPDMSB3_0300Q51373Positive315346 - 31599922844.5
conserved protein of unknown functionPDMSB3_0301Not AvailableNegative316065 - 31665223158.1
conserved exported protein of unknown functionPDMSB3_0302Not AvailableNegative316734 - 3170039409.07
protein of unknown functionPDMSB3_0303Not AvailablePositive316755 - 31715314241.3
beta-ketoadipate pathway transcriptional regulator, pcar/pcau/pobr familyPDMSB3_0304Q52154Negative317268 - 31809829224.3
terephthalate 1,2-dioxygenase, terminal oxygenase component subunit alpha 1PDMSB3_0305Q3C1E3Positive318239 - 31951347020.3
terephthalate 1,2-dioxygenase, terminal oxygenase component subunit beta 1PDMSB3_0306Q3C1E2Positive319516 - 31998617588.9
1,2-dihydroxy-3,5-cyclohexadiene-1, 4-dicarboxylate dehydrogenasePDMSB3_0307Q3C1E1Positive319983 - 32102935973.7
terephthalate 1,2-dioxygenase, reductase component 1PDMSB3_0308Q3C1E0Positive321059 - 32206336632.6
4-hydroxybenzoate transporter pcakPDMSB3_0309Q9I6Q3Positive322100 - 32345247984.1

Displaying genes 4741 – 4750 of 8285 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.