Paraburkholderia dioscoreae Msb3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia dioscoreae Msb3 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This species is notable for having five replicons, indicating a complex genome organization that may contribute to its adaptability in various environments. The presence of multiple replicons can provide advantages in terms of genetic diversity and regulation, potentially allowing Paraburkholderia dioscoreae Msb3 to thrive in different ecological niches. This trait may facilitate the bacterium's ability to respond to environmental stresses or to utilize varied substrates, which is often observed in members of the Burkholderia genus. The genetic information for Paraburkholderia dioscoreae Msb3 is cataloged under several accession numbers: LR699553.1, LR699554.1, LR699555.1, LR699556.1, and LR699557.1. These accessions reflect its genomic data, supporting further research into its properties and applications. In terms of ecological insight, the motility conferred by flagella may enhance the bacterium's ability to colonize specific environments, interact with plant root systems, or engage in biogeochemical cycles. Such characteristics could be integral to its role in soil ecosystems or its interactions with host organisms, suggesting potential applications in agriculture or bioremediation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia dioscoreae
StrainMsb3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia dioscoreae Msb3, Complete Genome

Gene Summary

Adenine Count

834166 bp

Thymine Count

836680 bp

Guanine Count

1404984 bp

Cytosine Count

1404167 bp

Genome Length

4479997 bp

Protein-coding Genes

4317 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glyceraldehyde dehydrogenase small chainPDMSB3_2266Q4J6M5Negative2343894 - 234445119804.7
aerobic-type carbon monoxide dehydrogenase, middle subunit coxm/cutm-like proteinPDMSB3_2267D7REY4Negative2344448 - 234526930255.5
aerobic-type carbon monoxide dehydrogenase, large subunit coxl/cutl-like proteinPDMSB3_2268D7REY3Negative2345266 - 2348304107828.0
3-octaprenyl-4-hydroxybenzoate carboxy-lyasePDMSB3_2269Q9JXP4Negative2348301 - 234894523240.3
ubid family decarboxylasePDMSB3_2270P41655Negative2348938 - 235042253453.8
transcriptional regulatorPDMSB3_2271Q08597Positive2350728 - 235171435967.4
hopanoid biosynthesis associated protein hpnkPDMSB3_2272C0Z8L5Negative2351806 - 235263029669.9
hopanoid biosynthesis associated glycosyl transferase protein hpniPDMSB3_2273Q8AY29Negative2352620 - 235389445916.6
conserved protein of unknown functionPDMSB3_2274Not AvailableNegative2353907 - 235425712650.9
dna-binding response regulator in two-component regulatory system with qsecPDMSB3_2275Q9HV32Positive2354588 - 235524724288.5

Displaying genes 2341 – 2350 of 8285 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.