Rhodoferax sediminis

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sediminis is a Gram-negative, rod-shaped bacterium distinguished by its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The specific accession number for Rhodoferax sediminis is CP035503.1, which allows for precise identification and retrieval of genetic information pertaining to this species. The presence of flagella suggests that Rhodoferax sediminis is capable of active movement, which may play a crucial role in its ecological interactions and survival strategies. Given its classification as a Gram-negative bacterium, it possesses a unique cell wall structure that can influence its susceptibility to antibiotics and its interactions with other microorganisms in its habitat. In ecological contexts, the motility conferred by flagella may enable Rhodoferax sediminis to navigate through sediment environments where it is likely found. This could facilitate its access to nutrients and colonization of specific niches within its ecosystem. Understanding the traits of Rhodoferax sediminis contributes to a broader insight into the diversity of microbial life in sedimentary environments and the roles these organisms play in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sediminis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sediminis , Complete Genome

Gene Summary

Adenine Count

783170 bp

Thymine Count

781148 bp

Guanine Count

1408635 bp

Cytosine Count

1414544 bp

Genome Length

4387497 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1850 domain-containing proteinEUB48_19655Not AvailablePositive4080830 - 408122214105.0
eal domain-containing proteinEUB48_19660Q9I310Positive4081508 - 408397691685.3
l-glutamate gamma-semialdehyde dehydrogenaseEUB48_19665O52485Negative4084000 - 4087071109257.0
winged helix-turn-helix transcriptional regulatorEUB48_19670P0A2S0Positive4087169 - 408765117936.0
hypothetical proteinEUB48_19675Not AvailablePositive4087794 - 408876235385.8
yggs family pyridoxal phosphate-dependent enzymeEUB48_19680P24562Negative4088777 - 408947825166.6
type iv pilus twitching motility protein piltEUB48_19685P24559Positive4089513 - 409055638144.1
pilt/pilu family type 4a pilus atpaseEUB48_19690G3XCX3Positive4090576 - 409171241856.7
nad(p)-dependent oxidoreductaseEUB48_19695O33730Positive4091716 - 409263031585.1
bon domain-containing proteinEUB48_19700P45301Negative4092689 - 409331822514.9

Displaying genes 3931 – 3940 of 4240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.