Rhodoferax sediminis

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sediminis is a Gram-negative, rod-shaped bacterium distinguished by its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The specific accession number for Rhodoferax sediminis is CP035503.1, which allows for precise identification and retrieval of genetic information pertaining to this species. The presence of flagella suggests that Rhodoferax sediminis is capable of active movement, which may play a crucial role in its ecological interactions and survival strategies. Given its classification as a Gram-negative bacterium, it possesses a unique cell wall structure that can influence its susceptibility to antibiotics and its interactions with other microorganisms in its habitat. In ecological contexts, the motility conferred by flagella may enable Rhodoferax sediminis to navigate through sediment environments where it is likely found. This could facilitate its access to nutrients and colonization of specific niches within its ecosystem. Understanding the traits of Rhodoferax sediminis contributes to a broader insight into the diversity of microbial life in sedimentary environments and the roles these organisms play in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sediminis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sediminis , Complete Genome

Gene Summary

Adenine Count

783170 bp

Thymine Count

781148 bp

Guanine Count

1408635 bp

Cytosine Count

1414544 bp

Genome Length

4387497 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenase, hydrophobic membrane anchor proteinEUB48_17305P51057Positive3589031 - 358939613731.4
succinate dehydrogenase flavoprotein subunitEUB48_17310G4V4G6Positive3589425 - 359121564767.2
succinate dehydrogenase iron-sulfur subunitEUB48_17315P07014Positive3591259 - 359196326711.4
succinate dehydrogenase assembly factor 2EUB48_17320Q8XXX1Positive3591976 - 359226011111.3
citrate synthaseEUB48_17325P94325Positive3592272 - 359358248403.6
lysr family transcriptional regulatorEUB48_17330Q4G384Positive3593791 - 359472934183.4
3-isopropylmalate dehydratase large subunitEUB48_17335Q126M9Positive3594759 - 359618050600.5
3-isopropylmalate dehydratase small subunitEUB48_17340Q126M8Positive3596255 - 359690824330.2
3-isopropylmalate dehydrogenaseEUB48_17345Q21XI1Positive3596951 - 359803938895.0
aspartate-semialdehyde dehydrogenaseEUB48_17350P41399Positive3598164 - 359932741372.2

Displaying genes 3461 – 3470 of 4240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.