Rhodoferax sediminis

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sediminis is a Gram-negative, rod-shaped bacterium distinguished by its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The specific accession number for Rhodoferax sediminis is CP035503.1, which allows for precise identification and retrieval of genetic information pertaining to this species. The presence of flagella suggests that Rhodoferax sediminis is capable of active movement, which may play a crucial role in its ecological interactions and survival strategies. Given its classification as a Gram-negative bacterium, it possesses a unique cell wall structure that can influence its susceptibility to antibiotics and its interactions with other microorganisms in its habitat. In ecological contexts, the motility conferred by flagella may enable Rhodoferax sediminis to navigate through sediment environments where it is likely found. This could facilitate its access to nutrients and colonization of specific niches within its ecosystem. Understanding the traits of Rhodoferax sediminis contributes to a broader insight into the diversity of microbial life in sedimentary environments and the roles these organisms play in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sediminis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sediminis


Gene Summary

Adenine Count

783170 bp

Thymine Count

781148 bp

Guanine Count

1408635 bp

Cytosine Count

1414544 bp

Genome Length

4387497 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
long-chain fatty acid--coa ligaseEUB48_15055Q0K844Positive3120425 - 312194254066.5
hypothetical proteinEUB48_15060P0A954Negative3121974 - 312228011764.8
helix-turn-helix domain-containing proteinEUB48_15065Not AvailableNegative3122850 - 312330517166.7
taurine abc transporter substrate-binding proteinEUB48_15070Q8YDR6Negative3123619 - 312466536816.5
crp/fnr family transcriptional regulatorEUB48_15075P29283Negative3124823 - 312553626261.0
thiamine pyrophosphate-binding proteinEUB48_15080Q8TKU6Positive3125602 - 312613219563.5
thiamine pyrophosphate-binding proteinEUB48_15085O86938Positive3126143 - 312673621104.3
glucose-methanol-choline oxidoreductaseEUB48_15090Q6LGH5Positive3126741 - 312836058296.6
mfs transporterEUB48_15095A0LNN5Negative3128406 - 312969845317.3
glycolate oxidase subunit glcfEUB48_15100P52074Negative3129664 - 313091444698.2

Displaying genes 3011 – 3020 of 4240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.