Rhodoferax sediminis

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sediminis is a Gram-negative, rod-shaped bacterium distinguished by its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The specific accession number for Rhodoferax sediminis is CP035503.1, which allows for precise identification and retrieval of genetic information pertaining to this species. The presence of flagella suggests that Rhodoferax sediminis is capable of active movement, which may play a crucial role in its ecological interactions and survival strategies. Given its classification as a Gram-negative bacterium, it possesses a unique cell wall structure that can influence its susceptibility to antibiotics and its interactions with other microorganisms in its habitat. In ecological contexts, the motility conferred by flagella may enable Rhodoferax sediminis to navigate through sediment environments where it is likely found. This could facilitate its access to nutrients and colonization of specific niches within its ecosystem. Understanding the traits of Rhodoferax sediminis contributes to a broader insight into the diversity of microbial life in sedimentary environments and the roles these organisms play in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sediminis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sediminis


Gene Summary

Adenine Count

783170 bp

Thymine Count

781148 bp

Guanine Count

1408635 bp

Cytosine Count

1414544 bp

Genome Length

4387497 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamine--trna ligase/yqey domain fusion proteinEUB48_14455B2U846Positive2994062 - 299586766909.1
is630 family transposaseEUB48_14460P16943Negative2995995 - 299707741239.8
dna repair proteinEUB48_14465Not AvailablePositive2997366 - 299808227255.6
type ii toxin-antitoxin system rele/pare family toxinEUB48_14470Not AvailablePositive2998163 - 299848912201.0
xre family transcriptional regulatorEUB48_14475Not AvailablePositive2998486 - 299878210752.3
class i sam-dependent dna methyltransferaseEUB48_14480O31504Positive2998897 - 3001683104159.0
hypothetical proteinEUB48_14485Q87AD4Positive3001774 - 300224716914.9
yeee/yede family proteinEUB48_14490Q87AD3Positive3002244 - 300270215891.9
isoprenylcysteine carboxylmethyltransferase family proteinEUB48_14495P43953Negative3002672 - 300313316623.8
nyn domain-containing proteinEUB48_14500Not AvailableNegative3003145 - 300389727519.7

Displaying genes 2891 – 2900 of 4240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.