Rhodoferax sediminis

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Rhodoferax

Description

Rhodoferax sediminis is a Gram-negative, rod-shaped bacterium distinguished by its possession of flagella, which facilitates motility. This organism has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability in various environments. The specific accession number for Rhodoferax sediminis is CP035503.1, which allows for precise identification and retrieval of genetic information pertaining to this species. The presence of flagella suggests that Rhodoferax sediminis is capable of active movement, which may play a crucial role in its ecological interactions and survival strategies. Given its classification as a Gram-negative bacterium, it possesses a unique cell wall structure that can influence its susceptibility to antibiotics and its interactions with other microorganisms in its habitat. In ecological contexts, the motility conferred by flagella may enable Rhodoferax sediminis to navigate through sediment environments where it is likely found. This could facilitate its access to nutrients and colonization of specific niches within its ecosystem. Understanding the traits of Rhodoferax sediminis contributes to a broader insight into the diversity of microbial life in sedimentary environments and the roles these organisms play in biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusRhodoferax
SpeciesRhodoferax sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodoferax sediminis
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodoferax sediminis , Complete Genome

Gene Summary

Adenine Count

783170 bp

Thymine Count

781148 bp

Guanine Count

1408635 bp

Cytosine Count

1414544 bp

Genome Length

4387497 bp

Protein-coding Genes

4191 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinyldiaminopimelate transaminaseEUB48_10705Q3Z8H5Positive2233406 - 223462944198.8
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseEUB48_10710A1W7L8Positive2234661 - 223548529448.4
pilt/pilu family type 4a pilus atpaseEUB48_10715G3XCX3Positive2235526 - 223673143616.7
succinyl-diaminopimelate desuccinylaseEUB48_10720Q21WT4Positive2236761 - 223793642057.5
50s ribosomal protein l3 n(5)-glutamine methyltransferaseEUB48_10725Q7VXJ6Positive2237933 - 223882031873.0
atp-binding cassette domain-containing proteinEUB48_10730A0A0H2VBH0Positive2238807 - 224082574015.6
hypothetical proteinEUB48_10735Not AvailablePositive2240953 - 224148618844.3
ethd family reductaseEUB48_10740Not AvailableNegative2241464 - 224177811351.7
acyl dehydrataseEUB48_10745Q2RQ36Positive2241942 - 224238215743.9
duf1993 domain-containing proteinEUB48_10750Not AvailableNegative2242429 - 224293518710.8

Displaying genes 2141 – 2150 of 4240 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.