Dickeya lacustris S29

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya lacustris S29 is a rod-shaped bacterium characterized by the presence of a single flagellum, which facilitates its motility. This species possesses one replicon in its genetic structure, indicating a streamlined genome organization. The accession number for its genomic data is CP114280.1, which can be referenced for more detailed genetic and molecular studies. As a member of the Dickeya genus, which is known for its role as a plant pathogen, D. lacustris S29 may contribute to ecological interactions within aquatic environments. The presence of flagella suggests that this bacterium can actively move through its habitat, which may enhance its ability to colonize plant surfaces or interact with other microbial communities. Understanding the motility and genetic characteristics of Dickeya lacustris S29 can provide insights into its ecological role and potential impact on host plants. Since Dickeya species are often associated with plant diseases, studying D. lacustris S29 may offer valuable information regarding its pathogenic potential and interactions within aquatic ecosystems. This knowledge is crucial for developing strategies to manage plant health and mitigate the effects of bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya lacustris
StrainS29

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatlake water; rhizosphere of waterside plants
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya lacustris S29, Complete Genome

Gene Summary

Adenine Count

1019733 bp

Thymine Count

1028288 bp

Guanine Count

1167877 bp

Cytosine Count

1151875 bp

Genome Length

4367773 bp

Protein-coding Genes

3671 genes

Non-Coding Genes

291 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane protein insertion efficiency factor yiddO1Q98_11860Q1C0B5Negative2615079 - 26153369597.77
ribonuclease p protein componentO1Q98_11865Q6CYR1Negative2615300 - 261565913970.2
50s ribosomal protein l34O1Q98_11870A7ZTQ9Negative2615678 - 26158185380.74
chromosomal replication initiator protein dnaaO1Q98_11875C6DGH7Positive2616509 - 261789752121.4
dna polymerase iii subunit betaO1Q98_11880P0A990Positive2617902 - 261900240563.9
dna replication/repair protein recfO1Q98_11885C6DGH9Positive2619135 - 262022040548.7
dna topoisomerase (atp-hydrolyzing) subunit bO1Q98_11890P0AES7Positive2620238 - 262272792511.0
gnat family n-acetyltransferaseO1Q98_11895Q8ZKE6Negative2622942 - 262337016379.0
gnat family n-acetyltransferaseO1Q98_11900Q8ZKE6Negative2623348 - 262380317409.9
mfs transporterO1Q98_11905O06481Negative2623893 - 262508041214.5

Displaying genes 2481 – 2490 of 3962 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.