Dickeya lacustris S29

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya lacustris S29 is a rod-shaped bacterium characterized by the presence of a single flagellum, which facilitates its motility. This species possesses one replicon in its genetic structure, indicating a streamlined genome organization. The accession number for its genomic data is CP114280.1, which can be referenced for more detailed genetic and molecular studies. As a member of the Dickeya genus, which is known for its role as a plant pathogen, D. lacustris S29 may contribute to ecological interactions within aquatic environments. The presence of flagella suggests that this bacterium can actively move through its habitat, which may enhance its ability to colonize plant surfaces or interact with other microbial communities. Understanding the motility and genetic characteristics of Dickeya lacustris S29 can provide insights into its ecological role and potential impact on host plants. Since Dickeya species are often associated with plant diseases, studying D. lacustris S29 may offer valuable information regarding its pathogenic potential and interactions within aquatic ecosystems. This knowledge is crucial for developing strategies to manage plant health and mitigate the effects of bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya lacustris
StrainS29

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatlake water; rhizosphere of waterside plants
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya lacustris S29, Complete Genome

Gene Summary

Adenine Count

1019733 bp

Thymine Count

1028288 bp

Guanine Count

1167877 bp

Cytosine Count

1151875 bp

Genome Length

4367773 bp

Protein-coding Genes

3671 genes

Non-Coding Genes

291 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinO1Q98_11810P72979Negative2602727 - 260314915761.2
nmra family nad(p)-binding proteinO1Q98_11815Not AvailablePositive2603236 - 260409629984.9
beta-glucoside-specific pts transporter subunit iiabcO1Q98_11820P40739Positive2604429 - 260633366914.4
glycoside hydrolase family 1 proteinO1Q98_11825P42403Positive2606330 - 260775453316.2
prd domain-containing proteinO1Q98_11830P39805Positive2607751 - 260859932146.9
tetr/acrr family transcriptional regulatorO1Q98_11835O31500Negative2609052 - 260962120868.9
is5 family transposaseO1Q98_11840Q69TH8Positive2609753 - 261084539577.7
sdr family oxidoreductaseO1Q98_11845Q8AVY8Positive2610916 - 261169828375.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeO1Q98_11850A1JT87Negative2611959 - 261332349080.7
membrane protein insertase yidcO1Q98_11855C6DK98Negative2613445 - 261507660556.2

Displaying genes 2471 – 2480 of 3962 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.