Dickeya lacustris S29

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya lacustris S29 is a rod-shaped bacterium characterized by the presence of a single flagellum, which facilitates its motility. This species possesses one replicon in its genetic structure, indicating a streamlined genome organization. The accession number for its genomic data is CP114280.1, which can be referenced for more detailed genetic and molecular studies. As a member of the Dickeya genus, which is known for its role as a plant pathogen, D. lacustris S29 may contribute to ecological interactions within aquatic environments. The presence of flagella suggests that this bacterium can actively move through its habitat, which may enhance its ability to colonize plant surfaces or interact with other microbial communities. Understanding the motility and genetic characteristics of Dickeya lacustris S29 can provide insights into its ecological role and potential impact on host plants. Since Dickeya species are often associated with plant diseases, studying D. lacustris S29 may offer valuable information regarding its pathogenic potential and interactions within aquatic ecosystems. This knowledge is crucial for developing strategies to manage plant health and mitigate the effects of bacterial infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya lacustris
StrainS29

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatlake water; rhizosphere of waterside plants
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya lacustris S29, Complete Genome

Gene Summary

Adenine Count

1019733 bp

Thymine Count

1028288 bp

Guanine Count

1167877 bp

Cytosine Count

1151875 bp

Genome Length

4367773 bp

Protein-coding Genes

3671 genes

Non-Coding Genes

291 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosome-binding factor rbfaO1Q98_08440Q6D9A4Negative1872052 - 187244714857.0
is5 family transposaseO1Q98_08445C6DKK3Negative1872522 - 187523799457.5
transcription termination factor nusaO1Q98_08450P0AFF8Negative1875263 - 187675054833.0
ribosome maturation factor rimpO1Q98_08455B5FI15Negative1876772 - 187722416791.1
Trna-metNot AvailableNot AvailablePositive1877445 - 1877521Not Available
Trna-leuNot AvailableNot AvailablePositive1877581 - 1877667Not Available
preprotein translocase subunit secgO1Q98_08470P0AGA1Negative1877723 - 187805811412.9
is5 family transposaseO1Q98_08475Q6D9B6Negative1878351 - 187968748905.0
dihydropteroate synthaseO1Q98_08480P0AC14Negative1879697 - 188053029877.3
atp-dependent zinc metalloprotease ftshO1Q98_08485Q8X9L0Negative1880656 - 188260270674.2

Displaying genes 1811 – 1820 of 3962 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.