Polaribacter litorisediminis OITF-11

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter litorisediminis OITF-11 is a Gram-negative bacterium characterized by its rod shape. This species is notable for having a single replicon, which is an important trait for its genetic structure. The genome of Polaribacter litorisediminis OITF-11 is represented in the database under the accession number CP082966.1. The ecological role of Polaribacter litorisediminis is likely significant in its native habitat, particularly in marine environments where it may contribute to the degradation of organic matter. Given that many species within the Polaribacter genus are known for their ability to metabolize complex organic compounds, this bacterium may play a role in nutrient cycling and energy flow in marine ecosystems. Understanding the traits of Polaribacter litorisediminis OITF-11 provides insights into the diversity and functionality of microbial communities in coastal sediment environments. These insights can be valuable for further research into microbial ecology and the potential biotechnological applications of such organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter litorisediminis
StrainOITF-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter litorisediminis OITF-11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter litorisediminis OITF-11, Complete Genome

Gene Summary

Adenine Count

1497015 bp

Thymine Count

1485791 bp

Guanine Count

680601 bp

Cytosine Count

676232 bp

Genome Length

4339639 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protease complex subunit prcb family proteinK8354_02105Not AvailablePositive487066 - 48751216613.5
uroporphyrinogen decarboxylaseK8354_02110A0M6C4Positive487518 - 48854938522.7
ei24 domain-containing proteinK8354_02115Not AvailablePositive488626 - 48938428610.9
oxygen-dependent coproporphyrinogen oxidaseK8354_02120Q7NEK3Positive490253 - 49116135305.5
hypothetical proteinK8354_02125Not AvailableNegative491217 - 49253648952.6
ycei family proteinK8354_02130Not AvailableNegative492579 - 49314520810.9
2-oxo acid dehydrogenase subunit e2K8354_02135P37942Positive493475 - 49479147647.6
gnat family n-acetyltransferaseK8354_02140Not AvailableNegative494843 - 49552926793.5
atp-dependent clp protease atp-binding subunitK8354_02145P37571Negative495700 - 49827096036.9
dna gyrase subunit aK8354_02150Q99XG5Positive498535 - 50109996007.2

Displaying genes 421 – 430 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.