Polaribacter litorisediminis OITF-11

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter litorisediminis OITF-11 is a Gram-negative bacterium characterized by its rod shape. This species is notable for having a single replicon, which is an important trait for its genetic structure. The genome of Polaribacter litorisediminis OITF-11 is represented in the database under the accession number CP082966.1. The ecological role of Polaribacter litorisediminis is likely significant in its native habitat, particularly in marine environments where it may contribute to the degradation of organic matter. Given that many species within the Polaribacter genus are known for their ability to metabolize complex organic compounds, this bacterium may play a role in nutrient cycling and energy flow in marine ecosystems. Understanding the traits of Polaribacter litorisediminis OITF-11 provides insights into the diversity and functionality of microbial communities in coastal sediment environments. These insights can be valuable for further research into microbial ecology and the potential biotechnological applications of such organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter litorisediminis
StrainOITF-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter litorisediminis OITF-11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter litorisediminis OITF-11, Complete Genome

Gene Summary

Adenine Count

1497015 bp

Thymine Count

1485791 bp

Guanine Count

680601 bp

Cytosine Count

676232 bp

Genome Length

4339639 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseK8354_01205P9WM20Positive299051 - 29973726376.3
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbK8354_01210Q4L3J1Negative299767 - 30051627250.2
hypothetical proteinK8354_01215Not AvailableNegative300592 - 30132325576.7
ragb/susd family nutrient uptake outer membrane proteinK8354_01220Not AvailableNegative301383 - 30287955165.6
susc/raga family tonb-linked outer membrane proteinK8354_01225T2KMI3Negative302905 - 306174118411.0
susd/ragb family nutrient-binding outer membrane lipoproteinK8354_01230Not AvailableNegative306409 - 30726030817.7
susd/ragb family nutrient-binding outer membrane lipoproteinK8354_01235Not AvailableNegative307570 - 30900052163.8
susc/raga family tonb-linked outer membrane proteinK8354_01240T2KM18Negative309012 - 312242117723.0
hypothetical proteinK8354_01245Not AvailableNegative312616 - 31428064100.4
30s ribosomal protein s12K8354_01250A0M5A2Positive314456 - 31483013747.9

Displaying genes 241 – 250 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.