Polaribacter litorisediminis OITF-11

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter litorisediminis OITF-11 is a Gram-negative bacterium characterized by its rod shape. This species is notable for having a single replicon, which is an important trait for its genetic structure. The genome of Polaribacter litorisediminis OITF-11 is represented in the database under the accession number CP082966.1. The ecological role of Polaribacter litorisediminis is likely significant in its native habitat, particularly in marine environments where it may contribute to the degradation of organic matter. Given that many species within the Polaribacter genus are known for their ability to metabolize complex organic compounds, this bacterium may play a role in nutrient cycling and energy flow in marine ecosystems. Understanding the traits of Polaribacter litorisediminis OITF-11 provides insights into the diversity and functionality of microbial communities in coastal sediment environments. These insights can be valuable for further research into microbial ecology and the potential biotechnological applications of such organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter litorisediminis
StrainOITF-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter litorisediminis OITF-11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter litorisediminis OITF-11, Complete Genome

Gene Summary

Adenine Count

1497015 bp

Thymine Count

1485791 bp

Guanine Count

680601 bp

Cytosine Count

676232 bp

Genome Length

4339639 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)/fad-dependent oxidoreductaseK8354_01055Q5S3I1Negative254887 - 25623651879.9
glycoside hydrolaseK8354_01060Not AvailablePositive256509 - 25751039310.1
universal stress proteinK8354_01065Q57997Positive257595 - 25842831083.6
lruc domain-containing proteinK8354_01070Not AvailablePositive260786 - 26304181759.1
inositol monophosphatase family proteinK8354_01075Q9M8S8Negative263172 - 26400830694.8
ecdysteroid 22-kinase family proteinK8354_01080Not AvailableNegative264010 - 26495736189.2
transglutaminaseK8354_01085Q8NBH2Negative265381 - 26634037499.1
3-deoxy-8-phosphooctulonate synthaseK8354_01090Q1IKD0Negative266628 - 26744629940.4
m20/m25/m40 family metallo-hydrolaseK8354_01095P25152Positive267515 - 26852536664.9
duf4136 domain-containing proteinK8354_01100Not AvailablePositive268691 - 26920619155.1

Displaying genes 211 – 220 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.