Polaribacter litorisediminis OITF-11

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Polaribacter

Description

Polaribacter litorisediminis OITF-11 is a Gram-negative bacterium characterized by its rod shape. This species is notable for having a single replicon, which is an important trait for its genetic structure. The genome of Polaribacter litorisediminis OITF-11 is represented in the database under the accession number CP082966.1. The ecological role of Polaribacter litorisediminis is likely significant in its native habitat, particularly in marine environments where it may contribute to the degradation of organic matter. Given that many species within the Polaribacter genus are known for their ability to metabolize complex organic compounds, this bacterium may play a role in nutrient cycling and energy flow in marine ecosystems. Understanding the traits of Polaribacter litorisediminis OITF-11 provides insights into the diversity and functionality of microbial communities in coastal sediment environments. These insights can be valuable for further research into microbial ecology and the potential biotechnological applications of such organisms.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPolaribacter
SpeciesPolaribacter litorisediminis
StrainOITF-11

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Polaribacter litorisediminis OITF-11
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Polaribacter litorisediminis OITF-11, Complete Genome

Gene Summary

Adenine Count

1497015 bp

Thymine Count

1485791 bp

Guanine Count

680601 bp

Cytosine Count

676232 bp

Genome Length

4339639 bp

Protein-coding Genes

3659 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulatorK8354_00855Q51373Positive209614 - 21028225438.0
response regulatorK8354_00860Not AvailablePositive210513 - 21118125520.9
dna polymerase iii subunit alphaK8354_00865O51526Negative211627 - 214584113209.0
dna polymerase ivK8354_00870Q3ZWB2Negative214592 - 21580645463.7
lexa family transcriptional regulatorK8354_00875Q5WNW9Positive215859 - 21663229399.5
type ix secretion system membrane protein porp/sprfK8354_00880Not AvailablePositive216843 - 21783537853.8
glutamate racemaseK8354_00885Q46Z37Negative217842 - 21863629710.5
omph family outer membrane proteinK8354_00890Not AvailableNegative218703 - 21920918803.9
omph family outer membrane proteinK8354_00895Not AvailableNegative219245 - 22007832524.4
outer membrane protein assembly factor bamaK8354_00900Q9K1H0Negative220143 - 22267494791.6

Displaying genes 171 – 180 of 3711 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.