Caldithrix abyssi LF13

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi LF13 is an anaerobic microorganism, indicating that it thrives in environments devoid of oxygen. This trait suggests its ecological niche is likely in deep-sea or subterranean habitats where oxygen levels are minimal. The species possesses a single replicon, which is characteristic of many prokaryotic organisms, indicating a streamlined genomic structure that may contribute to its adaptability in anaerobic conditions. The genome of Caldithrix abyssi LF13 is cataloged under the accession CP018099.1. This accession provides a reference for researchers interested in its genetic makeup and potential metabolic pathways. The anaerobic lifestyle of Caldithrix abyssi LF13 may involve unique biochemical processes, such as fermentation or sulfate reduction, which are common in anaerobic bacteria. Understanding the properties of Caldithrix abyssi LF13 contributes to our knowledge of microbial diversity in extreme environments. Its adaptation to anaerobic conditions may play a role in biogeochemical cycles, particularly in nutrient recycling within its habitat. The study of such organisms is crucial for uncovering the complexities of life in extreme environments and their potential applications in biotechnology or ecological management.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainLF13

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi LF13, Complete Genome

Gene Summary

Adenine Count

1364352 bp

Thymine Count

1369075 bp

Guanine Count

1122865 bp

Cytosine Count

1122249 bp

Genome Length

4978541 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rpla lsu ribosomal protein l1pCabys_892Q2RFN6Positive1061717 - 106241525443.1
rplj lsu ribosomal protein l10pCabys_893B2A4C8Positive1062435 - 106295619338.7
large subunit ribosomal protein l7/l12Cabys_894P0A0W8Positive1063120 - 10633658494.23
rpob dna-directed rna polymerase subunit betaCabys_895Q2S1Q5Positive1063400 - 1067176141195.0
rpoc dna-directed rna polymerase subunit beta'Cabys_896A6LE80Positive1067310 - 1071599160605.0
small subunit ribosomal protein s12Cabys_897B2J5A8Positive1071900 - 10720344898.0
rpsg ssu ribosomal protein s7pCabys_898B8J857Positive1072055 - 107252217974.1
fusa translation elongation factor 2 (ef-2/ef-g)Cabys_899Q748Y8Positive1072538 - 107461976865.4
translation elongation factor 1a (ef-1a/ef-tu)Cabys_900Q2II78Positive1074649 - 107583943761.6
rpsj ssu ribosomal protein s10pCabys_901B3WAL8Positive1075859 - 107616711443.1

Displaying genes 931 – 940 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.