Caldithrix abyssi LF13

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi LF13 is an anaerobic microorganism, indicating that it thrives in environments devoid of oxygen. This trait suggests its ecological niche is likely in deep-sea or subterranean habitats where oxygen levels are minimal. The species possesses a single replicon, which is characteristic of many prokaryotic organisms, indicating a streamlined genomic structure that may contribute to its adaptability in anaerobic conditions. The genome of Caldithrix abyssi LF13 is cataloged under the accession CP018099.1. This accession provides a reference for researchers interested in its genetic makeup and potential metabolic pathways. The anaerobic lifestyle of Caldithrix abyssi LF13 may involve unique biochemical processes, such as fermentation or sulfate reduction, which are common in anaerobic bacteria. Understanding the properties of Caldithrix abyssi LF13 contributes to our knowledge of microbial diversity in extreme environments. Its adaptation to anaerobic conditions may play a role in biogeochemical cycles, particularly in nutrient recycling within its habitat. The study of such organisms is crucial for uncovering the complexities of life in extreme environments and their potential applications in biotechnology or ecological management.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainLF13

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi LF13, Complete Genome

Gene Summary

Adenine Count

1364352 bp

Thymine Count

1369075 bp

Guanine Count

1122865 bp

Cytosine Count

1122249 bp

Genome Length

4978541 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hdig domain-containing proteinCabys_751Q9HWS0Negative869909 - 87113846365.5
transposase dde domain-containing proteinCabys_752Q46731Negative871419 - 87367786874.9
abc-type branched-chain amino acid transport system, substrate-binding proteinCabys_753O67310Positive873972 - 87583771742.2
hypothetical proteinCabys_754P84138Positive875858 - 87661028037.8
serine protease, subtilisin familyCabys_755Q5JIZ5Positive876656 - 87838963709.3
lexa sos-response transcriptional repressor, lexaCabys_756P61609Positive878600 - 87921423120.2
hypothetical proteinCabys_757A3DDH9Positive879201 - 87967117574.2
inner membrane proteinCabys_758P44300Negative879744 - 88036424295.9
tlp18.3, psb32 and molo-1 founding protein of phosphataseCabys_759P55140Negative880912 - 88134916757.8
uncharacterized proteinCabys_760P55140Negative881598 - 88236827894.4

Displaying genes 781 – 790 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.