Caldithrix abyssi LF13

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi LF13 is an anaerobic microorganism, indicating that it thrives in environments devoid of oxygen. This trait suggests its ecological niche is likely in deep-sea or subterranean habitats where oxygen levels are minimal. The species possesses a single replicon, which is characteristic of many prokaryotic organisms, indicating a streamlined genomic structure that may contribute to its adaptability in anaerobic conditions. The genome of Caldithrix abyssi LF13 is cataloged under the accession CP018099.1. This accession provides a reference for researchers interested in its genetic makeup and potential metabolic pathways. The anaerobic lifestyle of Caldithrix abyssi LF13 may involve unique biochemical processes, such as fermentation or sulfate reduction, which are common in anaerobic bacteria. Understanding the properties of Caldithrix abyssi LF13 contributes to our knowledge of microbial diversity in extreme environments. Its adaptation to anaerobic conditions may play a role in biogeochemical cycles, particularly in nutrient recycling within its habitat. The study of such organisms is crucial for uncovering the complexities of life in extreme environments and their potential applications in biotechnology or ecological management.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainLF13

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi LF13, Complete Genome

Gene Summary

Adenine Count

1364352 bp

Thymine Count

1369075 bp

Guanine Count

1122865 bp

Cytosine Count

1122249 bp

Genome Length

4978541 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
regulatory protein, fis familyCabys_741Q06065Positive860287 - 86163652335.4
lysa diaminopimelate decarboxylaseCabys_742O67262Positive861726 - 86298246442.4
alanine racemaseCabys_743Q8R860Positive862984 - 86409942061.4
protein of unknown function (duf4835)Cabys_744Not AvailablePositive864197 - 86503332838.9
smpb ssra-binding proteinCabys_745Q3AFC2Negative865512 - 86597317979.2
hypothetical proteinCabys_746Not AvailableNegative866128 - 86745051680.7
hypothetical proteinCabys_747Not AvailablePositive867687 - 8678335931.2
protease iCabys_748Q9M8R4Positive867856 - 86844321378.6
hypothetical proteinCabys_749Not AvailableNegative868478 - 8686125011.28
ribonuclease zCabys_750Q9RXP0Positive868598 - 86960538968.2

Displaying genes 771 – 780 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.