Caldithrix abyssi LF13

anaerobic

Kingdom

Pseudomonadati

Phylum

Calditrichota

Class

Calditrichia

Order

Calditrichales

Family

Calditrichaceae

Genus

Caldithrix

Description

Caldithrix abyssi LF13 is an anaerobic microorganism, indicating that it thrives in environments devoid of oxygen. This trait suggests its ecological niche is likely in deep-sea or subterranean habitats where oxygen levels are minimal. The species possesses a single replicon, which is characteristic of many prokaryotic organisms, indicating a streamlined genomic structure that may contribute to its adaptability in anaerobic conditions. The genome of Caldithrix abyssi LF13 is cataloged under the accession CP018099.1. This accession provides a reference for researchers interested in its genetic makeup and potential metabolic pathways. The anaerobic lifestyle of Caldithrix abyssi LF13 may involve unique biochemical processes, such as fermentation or sulfate reduction, which are common in anaerobic bacteria. Understanding the properties of Caldithrix abyssi LF13 contributes to our knowledge of microbial diversity in extreme environments. Its adaptation to anaerobic conditions may play a role in biogeochemical cycles, particularly in nutrient recycling within its habitat. The study of such organisms is crucial for uncovering the complexities of life in extreme environments and their potential applications in biotechnology or ecological management.

Taxonomy

KingdomPseudomonadati
PhylumCalditrichota
ClassCalditrichia
OrderCalditrichales
FamilyCalditrichaceae
GenusCaldithrix
SpeciesCaldithrix abyssi
StrainLF13

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Caldithrix abyssi LF13, Complete Genome

Gene Summary

Adenine Count

1364352 bp

Thymine Count

1369075 bp

Guanine Count

1122865 bp

Cytosine Count

1122249 bp

Genome Length

4978541 bp

Protein-coding Genes

4204 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gyra dna gyrase subunit aCabys_6P94605Positive5940 - 838492103.0
rex redox-sensing transcriptional repressorCabys_7A4J7K8Positive8443 - 907523220.1
tetratricopeptide repeat-containing proteinCabys_8O54981Negative9128 - 1021641449.1
mtna methylthioribose-1-phosphate isomeraseCabys_9A4XKS3Negative10213 - 1126538531.4
hypothetical proteinCabys_10Not AvailablePositive11346 - 1214331086.8
putative zinc-fingerCabys_11Not AvailableNegative12148 - 1240510448.9
rna polymerase sigma-70 factor, ecf subfamilyCabys_12Q7AKG9Negative12383 - 1296423266.7
histidine kinase-, dna gyrase b-, and hsp90-like atpaseCabys_13P39764Negative13024 - 1424746737.8
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin familyCabys_14P29820Negative14251 - 1621273652.9
hypothetical proteinCabys_15Not AvailablePositive16444 - 1814465492.9

Displaying genes 31 – 40 of 4263 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.