Agromyces mangrovi HIr16-25

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agromyces

Description

Agromyces mangrovi HIr16-25 is a Gram-positive bacterium characterized by its rod shape. It contains a single replicon, which is indicative of its genomic organization. The strain is cataloged under the accession number AP027737.1, allowing for further reference and study within microbial databases. The classification of Agromyces mangrovi within the genus Agromyces suggests that it may play a role in soil ecology, particularly in mangrove ecosystems where it was likely isolated. As a member of the Agromyces genus, this bacterium is expected to contribute to nutrient cycling and potentially interact with other soil microorganisms, aiding in the degradation of organic matter. Understanding the traits of Agromyces mangrovi HIr16-25 can provide insight into its ecological function, particularly in mangrove habitats, where microbial communities are crucial for maintaining the health and stability of these unique environments. The single replicon may also suggest a streamlined genetic framework that could be advantageous for survival in the dynamic conditions often found in mangrove ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgromyces
SpeciesAgromyces mangrovi (ex Wang et al. 2018)
StrainHIr16-25

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agromyces mangrovi HIr16-25, Complete Genome

Gene Summary

Adenine Count

504771 bp

Thymine Count

511666 bp

Guanine Count

1301449 bp

Cytosine Count

1295920 bp

Genome Length

3613806 bp

Protein-coding Genes

3490 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit deltaGCM10025877_31850P71730Positive3307632 - 330865736244.3
30s ribosomal protein s20GCM10025877_31860Q6AEB3Negative3308719 - 33089799218.12
elongation factor 4GCM10025877_31870B0RCT0Positive3309160 - 331101067828.8
duf1990 domain-containing proteinGCM10025877_31880Q9RST8Positive3311015 - 331166224191.6
coproporphyrinogen iii oxidaseGCM10025877_31890P9WP72Positive3311667 - 331289343771.3
hypothetical proteinGCM10025877_31900Not AvailableNegative3312909 - 331329213555.0
membrane proteinGCM10025877_31910Not AvailableNegative3313381 - 331381816170.7
heat-inducible transcription repressor hrcaGCM10025877_31920A5CRA6Positive3314008 - 331503036338.4
chaperone protein dnaj 2GCM10025877_31930Q6AEC0Positive3315083 - 331618339485.7
ribosomal rna small subunit methyltransferase eGCM10025877_31940P67203Positive3316185 - 331691925874.8

Displaying genes 3231 – 3240 of 3542 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.