Sphingomonas naphthae DKC-5-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas naphthae DKC-5-1 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This organism possesses five replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The strain is cataloged under multiple accession numbers, specifically CP117411.1, CP117412.1, CP117413.1, CP117414.1, and CP117415.1, which provide a basis for genetic and genomic studies. Sphingomonas species are known for their capability to degrade various environmental pollutants, particularly aromatic compounds. While specific metabolic pathways for Sphingomonas naphthae DKC-5-1 are not detailed here, the presence of five replicons may suggest a robust genetic framework that supports such biodegradation processes. This feature could enable the organism to thrive in contaminated environments, contributing to bioremediation efforts. In ecological terms, the adaptability of Sphingomonas naphthae DKC-5-1, combined with its motility, positions it as a potentially significant player in microbial communities that engage in the breakdown of toxic substances. Its ability to navigate through various substrates may enhance its role in nutrient cycling and pollutant degradation in diverse ecosystems. Therefore, understanding the genetic and phenotypic traits of this strain can provide insights into its ecological functions and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas naphthae
StrainDKC-5-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas naphthae DKC-5-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas naphthae DKC-5-1, Complete Genome

Gene Summary

Adenine Count

633777 bp

Thymine Count

632940 bp

Guanine Count

1323979 bp

Cytosine Count

1329131 bp

Genome Length

3919827 bp

Protein-coding Genes

3655 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i sam-dependent methyltransferasePQ455_11510Q05197Positive2403951 - 240459823802.8
hypothetical proteinPQ455_11515Not AvailablePositive2404601 - 240523624083.4
aminotransferase class iii-fold pyridoxal phosphate-dependent enzymePQ455_11520A1ASE9Negative2405333 - 240700060371.7
archaetidylserine decarboxylasePQ455_11525Q1D614Positive2407036 - 240792632215.1
hypothetical proteinPQ455_11530Not AvailablePositive2407978 - 240895834629.1
uracil-dna glycosylasePQ455_11535Q5SJ65Negative2408981 - 240966124018.9
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinasePQ455_11540P71512Positive2409685 - 241018218056.4
lysophospholipid acyltransferase family proteinPQ455_11545Q9HW50Negative2410179 - 241091325624.3
fur family transcriptional regulatorPQ455_11550O07315Negative2410918 - 241134015974.0
gnat family n-acetyltransferasePQ455_11555Q8ZJW4Negative2411401 - 241187116729.3

Displaying genes 2301 – 2310 of 3756 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.