Sphingomonas naphthae DKC-5-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas naphthae DKC-5-1 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This organism possesses five replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The strain is cataloged under multiple accession numbers, specifically CP117411.1, CP117412.1, CP117413.1, CP117414.1, and CP117415.1, which provide a basis for genetic and genomic studies. Sphingomonas species are known for their capability to degrade various environmental pollutants, particularly aromatic compounds. While specific metabolic pathways for Sphingomonas naphthae DKC-5-1 are not detailed here, the presence of five replicons may suggest a robust genetic framework that supports such biodegradation processes. This feature could enable the organism to thrive in contaminated environments, contributing to bioremediation efforts. In ecological terms, the adaptability of Sphingomonas naphthae DKC-5-1, combined with its motility, positions it as a potentially significant player in microbial communities that engage in the breakdown of toxic substances. Its ability to navigate through various substrates may enhance its role in nutrient cycling and pollutant degradation in diverse ecosystems. Therefore, understanding the genetic and phenotypic traits of this strain can provide insights into its ecological functions and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas naphthae
StrainDKC-5-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas naphthae DKC-5-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas naphthae DKC-5-1, Complete Genome

Gene Summary

Adenine Count

633777 bp

Thymine Count

632940 bp

Guanine Count

1323979 bp

Cytosine Count

1329131 bp

Genome Length

3919827 bp

Protein-coding Genes

3655 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribbon-helix-helix protein, copg familyPQ455_10660P55533Positive2241410 - 22416649184.91
type ii toxin-antitoxin system rele/pare family toxinPQ455_10665Q9A5D7Positive2241664 - 224195110858.8
nicotinate-nucleotide adenylyltransferasePQ455_10670Q2N6F4Positive2241948 - 224260725045.6
ribosome silencing factorPQ455_10675Q5NLX3Positive2242628 - 224299313099.6
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhPQ455_10680A5V9D8Positive2243000 - 224342215747.0
peptidoglycan dd-metalloendopeptidase family proteinPQ455_10685P37690Positive2243422 - 224460940982.6
hemerythrin domain-containing proteinPQ455_10690Q8YS92Positive2244706 - 224526620836.5
m20/m25/m40 family metallo-hydrolasePQ455_10695Q17QK3Positive2245423 - 224703658440.1
ribonuclease tPQ455_10700P44012Negative2247091 - 224780126102.7
carboxylating nicotinate-nucleotide diphosphorylasePQ455_10705P77938Negative2247839 - 224868129221.3

Displaying genes 2131 – 2140 of 3756 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.