Sphingomonas naphthae DKC-5-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas naphthae DKC-5-1 is a rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This organism possesses five replicons, indicating a complex genomic structure that may contribute to its adaptability and metabolic versatility. The strain is cataloged under multiple accession numbers, specifically CP117411.1, CP117412.1, CP117413.1, CP117414.1, and CP117415.1, which provide a basis for genetic and genomic studies. Sphingomonas species are known for their capability to degrade various environmental pollutants, particularly aromatic compounds. While specific metabolic pathways for Sphingomonas naphthae DKC-5-1 are not detailed here, the presence of five replicons may suggest a robust genetic framework that supports such biodegradation processes. This feature could enable the organism to thrive in contaminated environments, contributing to bioremediation efforts. In ecological terms, the adaptability of Sphingomonas naphthae DKC-5-1, combined with its motility, positions it as a potentially significant player in microbial communities that engage in the breakdown of toxic substances. Its ability to navigate through various substrates may enhance its role in nutrient cycling and pollutant degradation in diverse ecosystems. Therefore, understanding the genetic and phenotypic traits of this strain can provide insights into its ecological functions and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas naphthae
StrainDKC-5-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas naphthae DKC-5-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas naphthae DKC-5-1, Complete Genome

Gene Summary

Adenine Count

633777 bp

Thymine Count

632940 bp

Guanine Count

1323979 bp

Cytosine Count

1329131 bp

Genome Length

3919827 bp

Protein-coding Genes

3655 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mlae family lipid abc transporter permease subunitPQ455_09155Q92JD8Negative1958175 - 195928139220.6
had-ib family hydrolasePQ455_09160Q9I6F6Positive1959403 - 196009225256.7
csgg/hfab family proteinPQ455_09165Not AvailablePositive1960351 - 196131932674.0
duf2155 domain-containing proteinPQ455_09170P75691Negative1961469 - 196241633153.7
cystathionine gamma-synthase family proteinPQ455_09175Q8L0X4Negative1962542 - 196385546433.6
duf3297 family proteinPQ455_09180Not AvailableNegative1964015 - 196430810714.5
duf2945 domain-containing proteinPQ455_09185Not AvailablePositive1964459 - 19646627253.65
swib/mdm2 domain-containing proteinPQ455_09190Q05024Positive1964757 - 196505610911.3
ntp transferase domain-containing proteinPQ455_09195Q46810Positive1965219 - 196580020590.6
prc-barrel domain-containing proteinPQ455_09200Not AvailablePositive1965797 - 196638720141.4

Displaying genes 1881 – 1890 of 3756 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.