Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Mycobacterium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Mycobacteriaceae |
| Genus | Mycobacterium |
| Species | Mycobacterium avium |
| Strain | JIII-386 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | gut |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Bos taurus, Bos |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
750759 bp
Thymine Count
752891 bp
Guanine Count
1692430 bp
Cytosine Count
1693027 bp
Genome Length
4889107 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nlpc/p60 family peptidoglycan-binding protein ripd | CDQ89_13145 | O53168 | Positive | 2759001 - 2759855 | 29727.9 |
| acyltransferase | CDQ89_13150 | Q9WX70 | Positive | 2759953 - 2762118 | 78512.8 |
| glycogen debranching protein glgx | CDQ89_13155 | P0A4Y5 | Positive | 2762246 - 2764444 | 82099.7 |
| malto-oligosyltrehalose synthase | CDQ89_13160 | P9WQ20 | Positive | 2764448 - 2766748 | 82696.0 |
| malto-oligosyltrehalose trehalohydrolase | CDQ89_13165 | P9WQ22 | Positive | 2766741 - 2768513 | 65333.3 |
| hypothetical protein | CDQ89_13170 | Not Available | Positive | 2768550 - 2768711 | 5947.18 |
| rna polymerase sigma factor sigm | CDQ89_13175 | P40193 | Negative | 2768719 - 2770046 | 46243.2 |
| pyridoxamine 5'-phosphate oxidase family protein | CDQ89_13180 | Not Available | Positive | 2770076 - 2770741 | 23222.9 |
| phosphatase pap2 family protein | CDQ89_13185 | O34349 | Negative | 2770749 - 2771654 | 32356.9 |
| threonine ammonia-lyase | CDQ89_13190 | P66898 | Negative | 2771664 - 2772947 | 45046.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Systemic infection | Causes | PMC2082073 |
| Chronic intestinal inflammation | Causes | PMC2082073 |
| Johne's disease | Causes | PMC2082073 |
| Johne's disease | Causes | PMC3943398 |
| Johne's disease | Causes | PMC5276850 |
| Johne’s disease | Causes | PMC7977185 |
| Johne s disease | Causes | PMC7977185 |



